RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 AOC1P19801 751 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 PRKCHP24723 683 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CPT1AP50416 773 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SERPINH1P50454 418 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF132P52740 706 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 MAPK10P53779 464 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TWF1Q12792 350 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 EFEMP1Q12805 493 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 DLG2Q15700 870 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TEX44Q53QW1 395 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ANKS6Q68DC2 871 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 LBX2Q6XYB7 198 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CCDC81Q6ZN84 652 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TTC30AQ86WT1 665 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 C2orf69Q8N8R5 385 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ASIC4Q96FT7 647 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 FAXDC2Q96IV6 333 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CASS4Q9NQ75 786 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SCN3BQ9NY72 215 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 DSEQ9UL01 958 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 FKBP9O95302 570 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 BCL10O95999 233 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 BDNFP23560 247 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CDH5P33151 784 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 RGS4P49798 205 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC7A2P52569 658 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP1A4Q13733 1029 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 DPYSL2Q16555 572 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC9B1Q4ZJI4 515 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ZYG11AQ6WRX3 759 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 FKBP9P1Q75LS8 142 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 MYO1HQ8N1T3 1032 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 WDTC1Q8N5D0 677 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 PEBP4Q96S96 227 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 AGAP2Q99490 1192 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SEPT5Q99719 369 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CINPQ9BW66 212 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 C1orf21Q9H246 121 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 DPEP3Q9H4B8 488 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 NUDT5Q9UKK9 219 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 C1orf232A0A0U1RR37 186 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TK2O00142 265 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ITGAXP20702 1163 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 PATL1Q86TB9 770 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 EZH1Q92800 747 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 UTP4Q969X6 686 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 NXNL1Q96CM4 212 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 PARK7Q99497 189 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SIRPGQ9P1W8 387 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 EIF3LQ9Y262 564 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ADAMTS7Q9UKP4 1686 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 SOWAHBA6NEL2 793 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CCDC154A6NI56 674 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 KCNU1A8MYU2 1149 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 RFPL1O75677 317 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 LBPP18428 481 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CLCN5P51795 746 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 WNT7BP56706 349 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 C21orf59P57076 290 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 RALGDSQ12967 914 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 GTF2H3Q13889 308 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 GPR162Q16538 588 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PFKFB4Q16877 469 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MGAT5BQ3V5L5 792 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MTX3Q5HYI7 312 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MAP1SQ66K74 1059 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 STK32CQ86UX6 486 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PTGR2Q8N8N7 351 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MAGEE2Q8TD90 523 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CLEC4CQ8WTT0 213 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 DACH2Q96NX9 599 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 ASB2Q96Q27 587 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 NXF3Q9H4D5 531 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 NOL11Q9H8H0 719 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PRG3Q9Y2Y8 225 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 RAD54BQ9Y620 910 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 RTN3O95197 1032 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 OR1G1P47890 313 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TNFAIP8L3Q5GJ75 292 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 GNASQ5JWF2 1037 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PKN3Q6P5Z2 889 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CROCCP3Q8IVE0 287 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CENPLQ8N0S6 344 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM47BQ8NA70 645 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 FNDC5Q8NAU1 212 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TCF12Q99081 682 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CIB1Q99828 191 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 GPR63Q9BZJ6 419 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MUC3BQ9H195 1237 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CLK4Q9HAZ1 481 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 EIF2B3Q9NR50 452 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TIPRLO75663 272 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CRTAMO95727 393 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 INPP1P49441 399 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PPM1FP49593 454 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CLK1P49759 484 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF252P-AS1Q0IIN9 211 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 NR6A1Q15406 480 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 KCTD21Q4G0X4 260 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM98BQ52LJ0 330 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms