RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 CASC3O15234 703 aaKnown RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 YY2O15391 372 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 SPINT1O43278 529 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 SRCP12931 536 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 HGFP14210 728 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 KRT83P78385 493 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 EIF2B5Q13144 721 aaKnown RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 KCNAB2Q13303 367 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 FGL2Q14314 439 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 STILQ15468 1287 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 ABCA12Q86UK0 2595 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 VASH2Q86V25 355 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 ATP11CQ8NB49 1132 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 OR6C4Q8NGE1 309 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 SCG3Q8WXD2 468 aaKnown RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 ASB12Q8WXK4 309 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 ZNF396Q96N95 335 aaPredicted RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 PRMT1Q99873 361 aaKnown RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 SLC13A1Q9BZW2 595 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 MIS12Q9H081 205 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 FAM13BQ9NYF5 915 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 PISDQ9UG56 409 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 APOBEC3BQ9UH17 382 aaKnown RBP11.82□□□□□ -0.52
RNF4-216ENST00000511859 VPS28Q9UK41 221 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 OR51B4Q9Y5P0 310 aa11.82□□□□□ -0.52
RNF4-216ENST00000511859 ANKRD17O75179 2603 aaKnown RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 PRAMEF33A0A0G2JMD5 474 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 D6RAR5 112 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 M0QYT0 321 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 RAD51BO15315 384 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 AP1G1O43747 822 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 PRAMEF10O60809 474 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 YEATS4O95619 227 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 PAEPP09466 180 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 ZSCAN22P10073 491 aaPredicted RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 SLC2A3P11169 496 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 WT1P19544 449 aaPredicted RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 NEK3P51956 506 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 PFN3P60673 137 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 CCL7P80098 99 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 C1orf61Q13536 156 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 ARSIQ5FYB1 569 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 TMEM164Q5U3C3 297 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 SYPL2Q5VXT5 272 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 LVRNQ6Q4G3 990 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 TAC4Q86UU9 113 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 CIR1Q86X95 450 aaPredicted RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 SDR16C5Q8N3Y7 309 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 ARL10Q8N8L6 244 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 FAM149B1Q96BN6 582 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 PPP1R13BQ96KQ4 1090 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 KLF6Q99612 283 aaPredicted RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 CMKLR1Q99788 373 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 C1QTNF2Q9BXJ5 285 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 SLC12A9Q9BXP2 914 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 FOXP3Q9BZS1 431 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 IL36AQ9UHA7 158 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 LOXL2Q9Y4K0 774 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 FADS3Q9Y5Q0 445 aa11.81□□□□□ -0.52
RNF4-216ENST00000511859 SPENQ96T58 3664 aaKnown RBP11.81□□□□□ -0.52
RNF4-216ENST00000511859 CLDN11O75508 207 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 TRUB2O95900 331 aaKnown RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 MT-CO1P00395 513 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 MYL1P05976 194 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 ADRB3P13945 408 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 TBXAS1P24557 533 aaPredicted RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 RECQLP46063 649 aaPredicted RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 CCR10P46092 362 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 RPL34P49207 117 aaKnown RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 BLKP51451 505 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 CLCN6P51797 869 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 THOP1P52888 689 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 POLE2P56282 527 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 YPEL5P62699 121 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 MTA1Q13330 715 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 EIF4EBP2Q13542 120 aaPredicted RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 FAXCQ5TGI0 409 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 FBXL22Q6P050 247 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 ZFAND4Q86XD8 727 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 GRAMD1CQ8IYS0 662 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 PHACTR4Q8IZ21 702 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 FSTL5Q8N475 847 aaPredicted RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 DENND6BQ8NEG7 585 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 TFAP2BQ92481 460 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 USP7Q93009 1102 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 PAGE5Q96GU1 130 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 RPRD1AQ96P16 312 aaPredicted RBP11.8□□□□□ -0.52
RNF4-216ENST00000511859 LRRN3Q9H3W5 708 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 KCNK4Q9NYG8 393 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 GULP1Q9UBP9 304 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 DOLKQ9UPQ8 538 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 TBC1D30Q9Y2I9 924 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 ZDHHC9Q9Y397 364 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 COQ4Q9Y3A0 265 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 SDK2Q58EX2 2172 aa11.8□□□□□ -0.52
RNF4-216ENST00000511859 A0A1W2PQM1 296 aa11.79□□□□□ -0.52
RNF4-216ENST00000511859 M0QYV0 167 aa11.79□□□□□ -0.52
RNF4-216ENST00000511859 TOR1BO14657 336 aa11.79□□□□□ -0.52
RNF4-216ENST00000511859 TSPAN6O43657 245 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms