RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 GRIN3AQ8TCU5 1115 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 KLK6Q92876 244 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 VCPIP1Q96JH7 1222 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 FEM1CQ96JP0 617 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 CNPY3Q9BT09 278 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 NDFIP2Q9NV92 336 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 TOR4AQ9NXH8 423 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 HECAQ9UBI9 543 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-214ENST00000496043 FTSJ1Q9UET6 329 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 FCF1Q9Y324 198 aaKnown RBP12.99□□□□□ -0.33
PTPRF-214ENST00000496043 WASF2Q9Y6W5 498 aa12.99□□□□□ -0.33
PTPRF-214ENST00000496043 MAP1BP46821 2468 aaKnown RBP12.99□□□□□ -0.33
PTPRF-214ENST00000496043 RNF103O00237 685 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 CCP110O43303 1012 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 KDELR3O43731 214 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 POP4O95707 220 aaKnown RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 CD160O95971 181 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 EPHB2P29323 1055 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 AKT2P31751 481 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 CCNHP51946 323 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 NEK3P51956 506 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 AIF1P55008 147 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 SNRPD1P62314 119 aaKnown RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 RPL7AP62424 266 aaKnown RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 SCAPQ12770 1279 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 ZNF284Q2VY69 593 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 ZNF354CQ86Y25 554 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 PYROXD2Q8N2H3 581 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 GALNT15Q8N3T1 639 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 RYBPQ8N488 228 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 EID2Q8N6I1 236 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 ZCCHC14Q8WYQ9 949 aaKnown RBP12.98□□□□□ -0.33
PTPRF-214ENST00000496043 LRIG1Q96JA1 1093 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 MCEEQ96PE7 176 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 FZD10Q9ULW2 581 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 ACTL7AQ9Y615 435 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 HS3ST3A1Q9Y663 406 aa12.98□□□□□ -0.33
PTPRF-214ENST00000496043 ZSCAN5CA6NGD5 496 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 ENC1O14682 589 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 BUB1O43683 1085 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CREB3O43889 395 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 C1SP09871 688 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CDK4P11802 303 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 HNRNPA2B1P22626 353 aaKnown RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 ITGB7P26010 798 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 EPHA8P29322 1005 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 ZNF165P49910 485 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 YBEYP58557 167 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 RPS21P63220 83 aaKnown RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 MYLK3Q32MK0 819 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CCDC157Q569K6 752 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 PPP1R15BQ5SWA1 713 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CAVIN1Q6NZI2 390 aaKnown RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 FAM174AQ8TBP5 190 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CASKIN2Q8WXE0 1202 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 BAP1Q92560 729 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CNDP2Q96KP4 475 aaKnown RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 EPAS1Q99814 870 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 SLC17A9Q9BYT1 436 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 TM6SF2Q9BZW4 377 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 ZDHHC6Q9H6R6 413 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CATSPERBQ9H7T0 1116 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 PARVAQ9NVD7 372 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 DONSONQ9NYP3 566 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 AIPL1Q9NZN9 384 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 ZFR2Q9UPR6 939 aaKnown RBP12.97□□□□□ -0.33
PTPRF-214ENST00000496043 CA5BQ9Y2D0 317 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 PCDHGA1Q9Y5H4 931 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 FADS3Q9Y5Q0 445 aa12.97□□□□□ -0.33
PTPRF-214ENST00000496043 A0A1W2PQC6 194 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 SRRM3A6NNA2 597 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 C16orf96A6NNT2 1141 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 WASH4PA8MWX3 477 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 TMCO5BA8MYB1 307 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 KRIT1O00522 736 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 AP1G1O43747 822 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 GSRP00390 522 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 THEGLP0DJG4 465 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 ADRB3P13945 408 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 PRLRP16471 622 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 RAD51Q06609 339 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 SGCGQ13326 291 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 MAMLD1Q13495 774 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 ASIC2Q16515 512 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 INO80DQ53TQ3 878 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 ZNF805Q5CZA5 627 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 SFMBT2Q5VUG0 894 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 KIAA1161Q6NSJ0 714 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 LEKR1Q6ZMV7 388 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 ZSCAN30Q86W11 494 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 DCP2Q8IU60 420 aaKnown RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 RTL3Q8N8U3 475 aaKnown RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 TMEM145Q8NBT3 493 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 OR2AP1Q8NGE2 309 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 RAB7BQ96AH8 199 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 NAP1L5Q96NT1 182 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-214ENST00000496043 EDEM3Q9BZQ6 932 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 HAUS4Q9H6D7 363 aa12.96□□□□□ -0.33
PTPRF-214ENST00000496043 KLHL11Q9NVR0 708 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms