RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TUBA1AQ71U36 451 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 PATL1Q86TB9 770 aaKnown RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 MYPOPQ86VE0 399 aaPredicted RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 NRSN1Q8IZ57 195 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 MAB21L3Q8N8X9 362 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 FAR1Q8WVX9 515 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 TMEM18Q96B42 140 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 SCMH1Q96GD3 660 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 RIPOR3Q96MK2 946 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 ZNF385AQ96PM9 386 aaKnown RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 TUBA1CQ9BQE3 449 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 IFT27Q9BW83 186 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 UBTD1Q9HAC8 227 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 NLRC4Q9NPP4 1024 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 SCRT2Q9NQ03 307 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 SLC38A8A6NNN8 435 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 RASA4BC9J798 803 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 RASA4O43374 803 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 EDIL3O43854 480 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 LARGE1O95461 756 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 COL2A1P02458 1487 aaPredicted RBP4.08□□□□□ -1.76
VPS50-219ENST00000495039 TYK2P29597 1187 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 AKT1P31749 480 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 MST1RQ04912 1400 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 OS9Q13438 667 aaPredicted RBP4.08□□□□□ -1.76
VPS50-219ENST00000495039 ZACNQ401N2 412 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 HIBCHQ6NVY1 386 aaPredicted RBP4.08□□□□□ -1.76
VPS50-219ENST00000495039 KLHDC8BQ8IXV7 354 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 OR2C3Q8N628 320 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 BRI3BPQ8WY22 251 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 NPAS1Q99742 590 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 MECRQ9BV79 373 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 GFRA4Q9GZZ7 299 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 CEP83Q9Y592 693 aa4.08□□□□□ -1.76
VPS50-219ENST00000495039 A0A1B0GU03 582 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 NPIPB11E5RHQ5 1161 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 NCK2O43639 380 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 CRYAAP02489 173 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 PRPH2P23942 346 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 EEF1GP26641 437 aaKnown RBP4.07□□□□□ -1.76
VPS50-219ENST00000495039 KLRK1P26718 216 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 RCAN1P53805 252 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 SF3A3Q12874 501 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS50-219ENST00000495039 RAB30Q15771 203 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 ACCSLQ4AC99 568 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 IZUMO3Q5VZ72 239 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 NEK10Q6ZWH5 1172 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 DGLUCYQ7Z3D6 616 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 PGBD5Q8N414 524 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 SAMD3Q8N6K7 520 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 RFWD2Q8NHY2 731 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 LRRC8CQ8TDW0 803 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 ZNF566Q969W8 418 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 MPHOSPH6Q99547 160 aaKnown RBP4.07□□□□□ -1.76
VPS50-219ENST00000495039 HDHD5Q9BXW7 423 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 LHPPQ9H008 270 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS50-219ENST00000495039 CERS4Q9HA82 394 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 TM7SF3Q9NS93 570 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 FNIP2Q9P278 1114 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 OSGIN2Q9Y236 505 aa4.07□□□□□ -1.76
VPS50-219ENST00000495039 IGHV4OR15-8A0A075B7B6 117 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 P2RY10O00398 339 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 HNRNPDLO14979 420 aaKnown RBP4.06□□□□□ -1.76
VPS50-219ENST00000495039 FGF18O76093 207 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 RNF224P0DH78 156 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 FCGR2AP12318 317 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 CKMT1AP12532 417 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 GSTM2P28161 218 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 RHBDL3P58872 404 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 BTKQ06187 659 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 NCAPH2Q6IBW4 605 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 FOXL2NBQ6ZUU3 175 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 MARK2Q7KZI7 788 aaKnown RBP4.06□□□□□ -1.76
VPS50-219ENST00000495039 WDR5BQ86VZ2 330 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 RBFAQ8N0V3 343 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 DEPTORQ8TB45 409 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 SGCZQ96LD1 299 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 TRMT61BQ9BVS5 477 aaKnown RBP4.06□□□□□ -1.76
VPS50-219ENST00000495039 TCF19Q9Y242 345 aa4.06□□□□□ -1.76
VPS50-219ENST00000495039 IGKV3D-20A0A0C4DH25 116 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 AGAP5A6NIR3 686 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 FAM72CH0Y354 149 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 KIF1CO43896 1103 aaKnown RBP4.05□□□□□ -1.76
VPS50-219ENST00000495039 CH25HO95992 272 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 NPPBP16860 134 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 RPL3P39023 403 aaKnown RBP4.05□□□□□ -1.76
VPS50-219ENST00000495039 HTR3AP46098 478 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 PCP4P48539 62 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 ADORA2A-AS1P86434 159 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 BIRC2Q13490 618 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 DHX34Q14147 1143 aaKnown RBP4.05□□□□□ -1.76
VPS50-219ENST00000495039 CALCRLQ16602 461 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 C14orf177Q52M58 125 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 FAM72AQ5TYM5 149 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 FAM72DQ6L9T8 149 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 FAM72BQ86X60 149 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 MTBPQ96DY7 904 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 TRIM31Q9BZY9 425 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 CLK4Q9HAZ1 481 aaKnown RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms