RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CDH9Q9ULB4 789 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 MRASO14807 208 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 SERPINF2P08697 491 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 NFKB1P19838 968 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 NAGLUP54802 743 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HADHBP55084 474 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 ARHGEF7Q14155 803 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 RIN3Q8TB24 985 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 SLC44A1Q8WWI5 657 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 PIF1Q9H611 641 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 MARCH2Q9P0N8 246 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 A6NHS1 94 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 BUD23O43709 281 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 CCDC166P0CW27 439 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 ELNP15502 786 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 CD151P48509 253 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 ELAVL2Q12926 359 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 TTC30AQ86WT1 665 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HS6ST3Q8IZP7 471 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 MRPS31Q92665 395 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 UBAP1Q9NZ09 502 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 TRMT6Q9UJA5 497 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 TELO2Q9Y4R8 837 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 MAGEB16A2A368 324 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 RGSL1A5PLK6 1076 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 ERI2A8K979 691 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 URODP06132 367 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 RGS4P49798 205 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 PCBP1Q15365 356 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 FNBP1LQ5T0N5 605 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 TTC23LQ6PF05 361 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 PSTKQ8IV42 348 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 KBTBD2Q8IY47 623 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 GPR152Q8TDT2 470 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 ADAM7Q9H2U9 754 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 PCDHGC3Q9UN70 934 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 LSM1O15116 133 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 EPHA3P29320 983 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 FKBP1BP68106 108 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 FASTKQ14296 549 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 POLD3Q15054 466 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 ANKRD22Q5VYY1 191 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 SPRYD7Q5W111 196 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 TNS4Q8IZW8 715 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 SEC14L1Q92503 715 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 ABCC13Q9NSE7 274 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 RABGEF1Q9UJ41 708 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 SH3D19Q5HYK7 790 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 SH3PXD2AQ5TCZ1 1133 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 UNC5AQ6ZN44 842 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 TMC7Q7Z402 723 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 LGI2Q8N0V4 545 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 FAM47BQ8NA70 645 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 YME1L1Q96TA2 773 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 LPIN3Q9BQK8 851 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 TOMM70O94826 608 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 GLP2RO95838 553 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 RHOAP61586 193 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 POU4F1Q01851 419 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 NOMO1Q15155 1222 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 ANKRD23Q86SG2 305 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 LZTR1Q8N653 840 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 PLD5Q8N7P1 536 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 CPT1BQ92523 772 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 C7orf26Q96N11 449 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 NMRAL1Q9HBL8 299 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 DYRK4Q9NR20 520 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 COL1A2P08123 1366 aa16.5■□□□□ 0.23
CCDC88B-209ENST00000494080 MTA2O94776 668 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 ST8SIA6P61647 398 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TRAF7Q6Q0C0 670 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 MYO1HQ8N1T3 1032 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 P2RY11Q96G91 374 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 BTBD9Q96Q07 612 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 RUBCNLQ9H714 662 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 ATP13A1Q9HD20 1204 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 PNPLA3Q9NST1 481 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TBC1D13Q9NVG8 400 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 SFMBT1Q9UHJ3 866 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 SLC27A5Q9Y2P5 690 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 AHDC1Q5TGY3 1603 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 SIN3BO75182 1162 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TCF4P15884 667 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 NPY2RP49146 381 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 DDR2Q16832 855 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TMEM63BQ5T3F8 832 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 RNASEH2BQ5TBB1 312 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 ANKS1BQ7Z6G8 1248 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 BANPQ8N9N5 519 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 SCUBE2Q9NQ36 999 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 SCN3BQ9NY72 215 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 RNF112Q9ULX5 631 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TRIM17Q9Y577 477 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 NT5C1B-RDH14C9J2C7 533 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 TSHRP16473 764 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 LMO2P25791 158 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 GJA8P48165 433 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 RABGGTBP53611 331 aa16.49■□□□□ 0.23
CCDC88B-209ENST00000494080 EML3Q32P44 896 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms