RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.3□□□□□ -1.727e-6■■□□□ 12.1
BRCA1-220ENST00000492859 NR2E3Q9Y5X4 410 aa4.3□□□□□ -1.72
BRCA1-220ENST00000492859 NFS1Q9Y697 457 aa4.3□□□□□ -1.72
BRCA1-220ENST00000492859 COL17A1Q9UMD9 1497 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-220ENST00000492859 ACEP12821 1306 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SOS2Q07890 1332 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SALL3Q9BXA9 1300 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 A0A088AWK7 358 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SPECC1L-ADORA2AF8WAN1 911 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 J3QW42 95 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 HIP1O00291 1037 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 C2CD2LO14523 706 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 RASGRF2O14827 1237 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 HNRNPDLO14979 420 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SHOXO15266 292 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 MEFVO15553 781 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 NOBOXO60393 691 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 LILRA1O75019 489 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PDE8BO95263 885 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PGLSO95336 258 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TGM6O95932 706 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 UQCRFS1P1P0C7P4 283 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CCDC166P0CW27 439 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 HSMCR30P0CW71 290 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 EZRP15311 586 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PSMA2P25787 234 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 EPHA8P29322 1005 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CORO1AP31146 461 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 GGT5P36269 586 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PRKCIP41743 596 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TXKP42681 527 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CTSOP43234 321 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 HARS2P49590 506 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ANXA11P50995 505 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF143P52747 638 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 EIF3BP55884 814 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 RAB1AP62820 205 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CEBPZQ03701 1054 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SCN1BQ07699 218 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SF3A3Q12874 501 aaKnown RBP eCLIP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 OVGP1Q12889 678 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 NOMO1Q15155 1222 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 MTFR1Q15390 333 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SF1Q15637 639 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 GPR68Q15743 365 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CEBPEQ15744 281 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF829Q3KNS6 432 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 NKAIN1Q4KMZ8 207 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ARHGAP15Q53QZ3 475 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 C9orf152Q5JTZ5 239 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TMEM31Q5JXX7 168 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 LCN1P1Q5VSP4 162 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 HEPHL1Q6MZM0 1159 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 DPY19L2P1Q6NXN4 242 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CLEC17AQ6ZS10 378 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 RBM43Q6ZSC3 357 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF365Q70YC5 407 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 MIGA2Q7L4E1 593 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TMC3Q7Z5M5 1100 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 NEK8Q86SG6 692 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 BIVMQ86UB2 503 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 FAM131BQ86XD5 332 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PLD5Q8N7P1 536 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 FRMD1Q8N878 549 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 FSIP1Q8NA03 581 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 KDM1BQ8NB78 822 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ICA1LQ8NDH6 482 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 OR52E1Q8NGJ3 308 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ACTRT2Q8TDY3 377 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SLC22A17Q8WUG5 538 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ATL1Q8WXF7 558 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TNFRSF14Q92956 283 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ISG20Q96AZ6 181 aaKnown RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF707Q96C28 371 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 EID2BQ96D98 161 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CCDC51Q96ER9 411 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 PDLIM2Q96JY6 352 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 INSM2Q96T92 566 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SLC29A1Q99808 456 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 LBHD1Q9BQE6 289 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 JPH2Q9BR39 696 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SYT17Q9BSW7 474 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 WACQ9BTA9 647 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 C1QTNF3Q9BXJ4 246 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 USP26Q9BXU7 913 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 GON7Q9BXV9 100 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 GLIS2Q9BZE0 524 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TMEM117Q9H0C3 514 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 TAF1DQ9H5J8 278 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 RMND5AQ9H871 391 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 ARMT1Q9H993 441 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 SUGCTQ9HAC7 445 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CYP3A43Q9HB55 503 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 RXFP1Q9HBX9 757 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 FAM212BQ9NTI7 297 aaPredicted RBP4.29□□□□□ -1.72
BRCA1-220ENST00000492859 FAM86C1Q9NVL1 165 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 NDUFAF4Q9P032 175 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 DNAJB4Q9UDY4 337 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 DCDC2Q9UHG0 476 aa4.29□□□□□ -1.72
BRCA1-220ENST00000492859 CPA4Q9UI42 421 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms