RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 CYP2U1Q7Z449 544 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 RCOR2Q8IZ40 523 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 EXD1Q8NHP7 514 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 PCDH19Q8TAB3 1148 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 PIP4K2CQ8TBX8 421 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 RAPGEF5Q92565 580 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 FATE1Q969F0 183 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 ERLEC1Q96DZ1 483 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 TOE1Q96GM8 510 aaKnown RBP14.89□□□□□ -0.03
LIMS3-205ENST00000487150 ALS2CR12Q96Q35 445 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 FAM129BQ96TA1 746 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 TM6SF2Q9BZW4 377 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 BRD8Q9H0E9 1235 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 SLC6A17Q9H1V8 727 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 TNKS2Q9H2K2 1166 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 WSB2Q9NYS7 404 aaPredicted RBP14.89□□□□□ -0.03
LIMS3-205ENST00000487150 SUSD2Q9UGT4 822 aa14.89□□□□□ -0.03
LIMS3-205ENST00000487150 MEI4A8MW99 385 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 KPNA3O00505 521 aaPredicted RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 PPP1R12AO14974 1030 aaPredicted RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 SMAD6O43541 496 aaKnown RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 MFSD11O43934 449 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 ZNF189O75820 626 aaPredicted RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 NEBLO76041 1014 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 SEMA4FO95754 770 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 TNNT1P13805 278 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 IL4RP24394 825 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 CTNNA2P26232 953 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 NUDT1P36639 197 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 GARSP41250 739 aaKnown RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 NR2C2P49116 596 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 RWDD2BP57060 319 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 GALNT2Q10471 571 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 MMRN1Q13201 1228 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 ZNF235Q14590 738 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 GSE1Q14687 1217 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 PPP2R5EQ16537 467 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 ATP13A4Q4VNC1 1196 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 RALGPS1Q5JS13 557 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 DPY19L3Q6ZPD9 716 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 CCDC50Q8IVM0 306 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 RYBPQ8N488 228 aaPredicted RBP14.88□□□□□ -0.03
LIMS3-205ENST00000487150 HDDC3Q8N4P3 179 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 GRIN3AQ8TCU5 1115 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 TUBGCP5Q96RT8 1024 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 MTG2Q9H4K7 406 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 AMACRQ9UHK6 382 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 AMFRQ9UKV5 643 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 MFHAS1Q9Y4C4 1052 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 CKAP5Q14008 2032 aa14.88□□□□□ -0.03
LIMS3-205ENST00000487150 A0A1W2PP55 124 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 GRID2IPA4D2P6 1211 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CD160O95971 181 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 GNSP15586 552 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 BCKDHBP21953 392 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 TGM2P21980 687 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 ITGB7P26010 798 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CSNK1DP48730 415 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 DHPSP49366 369 aaPredicted RBP14.87□□□□□ -0.03
LIMS3-205ENST00000487150 NEK3P51956 506 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 AP1S1P61966 158 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CCZ1BP86790 482 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CCZ1P86791 482 aaPredicted RBP14.87□□□□□ -0.03
LIMS3-205ENST00000487150 NSUN2Q08J23 767 aaKnown RBP eCLIP14.87□□□□□ -0.03
LIMS3-205ENST00000487150 LBRQ14739 615 aaKnown RBP14.87□□□□□ -0.03
LIMS3-205ENST00000487150 PDK1Q15118 436 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CFAP58Q5T655 872 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 SLC9A4Q6AI14 798 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 CPNE8Q86YQ8 564 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 RFX6Q8HWS3 928 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 LRRC57Q8N9N7 239 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 OR2T34Q8NGX1 318 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 RAB7BQ96AH8 199 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 HDAC11Q96DB2 347 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 PSKH2Q96QS6 385 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 HDAC8Q9BY41 377 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 ZDHHC6Q9H6R6 413 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 ETNK2Q9NVF9 386 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 MBD1Q9UIS9 605 aaPredicted RBP14.87□□□□□ -0.03
LIMS3-205ENST00000487150 SALL4Q9UJQ4 1053 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 TFR2Q9UP52 801 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 INVSQ9Y283 1065 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 EFR3BQ9Y2G0 817 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 HYOU1Q9Y4L1 999 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 PCDHA3Q9Y5H8 950 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 DUSP10Q9Y6W6 482 aa14.87□□□□□ -0.03
LIMS3-205ENST00000487150 DOCK4Q8N1I0 1966 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 A0A1W2PQ67 120 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 C3orf70A6NLC5 250 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-205ENST00000487150 J3KR12 359 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 KRIT1O00522 736 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 MAFKO60675 156 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 ZNF821O75541 412 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-205ENST00000487150 LEFTY1O75610 366 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 CCNCP24863 283 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 NFKBIAP25963 317 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 MPLP40238 635 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 CDKN2BP42772 138 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 SUOXP51687 545 aa14.86□□□□□ -0.03
LIMS3-205ENST00000487150 HNRNPDQ14103 355 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms