RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SCARA3Q6AZY7 606 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ERAP2Q6P179 960 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZFP1Q6P2D0 407 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 GLT6D1Q7Z4J2 308 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PATL1Q86TB9 770 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZC3H3Q8IXZ2 948 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PYROXD2Q8N2H3 581 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PCED1BQ96HM7 432 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TTPALQ9BTX7 342 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZCWPW1Q9H0M4 648 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 EFCAB1Q9HAE3 211 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PCDHA11Q9Y5I1 949 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PAGE1O75459 146 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TFE3P19532 575 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 LIN52Q52LA3 116 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 AAGABQ6PD74 315 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 KYAT3Q6YP21 454 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 DENND1CQ8IV53 801 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 MYO1HQ8N1T3 1032 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF786Q8N393 782 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 KLHL23Q8NBE8 558 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CPT1BQ92523 772 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 KCTD15Q96SI1 283 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 HNRNPABQ99729 332 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TCF7L2Q9NQB0 619 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 FAM95CA0A1B0GW59 222 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ATG7O95352 703 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CYP3A5P20815 502 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CRABP2P29373 138 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 GLUD2P49448 558 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 XIAPP98170 497 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 FASTKD3Q14CZ7 662 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PDK3Q15120 406 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PYDC1Q8WXC3 89 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 BORCS6Q96GS4 357 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF570Q96NI8 536 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 SEMA3CQ99985 751 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 RUBCNLQ9H714 662 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CACNG4Q9UBN1 327 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TMEM59LQ9UK28 342 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 BLOC1S6Q9UL45 172 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 A8MX80 341 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 MFSD11O43934 449 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PIRTP0C851 137 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 VAV1P15498 845 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 ATXN1P54253 815 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 C16orf72Q14CZ0 275 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 SOWAHAQ2M3V2 549 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 GALNTL6Q49A17 601 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 RBM23Q86U06 439 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 CCDC185Q8N715 623 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 CYGBQ8WWM9 190 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 TRMT13Q9NUP7 481 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 SLCO1B7G3V0H7 640 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PPEF2O14830 753 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 MDM4O15151 490 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 TSHRP16473 764 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 POLR2EP19388 210 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PPP3CCP48454 512 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 TAF10Q12962 218 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PRKAA1Q13131 559 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 NAB1Q13506 487 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 POU5F2Q8N7G0 328 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 CLEC4CQ8WTT0 213 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 SYBUQ9NX95 663 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 MORF4L1Q9UBU8 362 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 COL18A1P39060 1754 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 A0A1W2PQH9 124 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 LYNP07948 512 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 MYH3P11055 1940 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PTPN9P43378 593 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PLOD1Q02809 727 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 WASHC5Q12768 1159 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF792Q3KQV3 632 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 FNDC3BQ53EP0 1204 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 INTS6LQ5JSJ4 861 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 ANKRD22Q5VYY1 191 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 TAS1R3Q7RTX0 852 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 C12orf50Q8NA57 414 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 DGCR14Q96DF8 476 aaKnown RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 EXOC2Q96KP1 924 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 PALMDQ9NP74 551 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 GALNT8Q9NY28 637 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 TAS2R13Q9NYV9 303 aa11.15□□□□□ -0.62
HDAC6-228ENST00000486227 ZMYND8Q9ULU4 1186 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-228ENST00000486227 MEI4A8MW99 385 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FOXO6A8MYZ6 492 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 KPNA3O00505 521 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 IGSF6O95976 241 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TRPC1P48995 793 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ACLYP53396 1101 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 NAGLUP54802 743 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FBXW4P57775 412 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 BRMS1LQ5PSV4 323 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 DCAF12L1Q5VU92 463 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 PLPP4Q5VZY2 271 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 CTU1Q7Z7A3 348 aaKnown RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 DQX1Q8TE96 717 aaKnown RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 CASP10Q92851 521 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 KLHL5Q96PQ7 755 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms