RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 VTI1BQ9UEU0 232 aa13.69□□□□□ -0.22
USP42-206ENST00000479544 A0A088AWK7 358 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 LOC100506127A0A0U1RQW1 187 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 CCNT2O60583 730 aaKnown RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 HDCP19113 662 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 CRABP2P29373 138 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 POU4F1Q01851 419 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 LSAMPQ13449 338 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 MADCAM1Q13477 382 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SH3D19Q5HYK7 790 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 STYK1Q6J9G0 422 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 FSTL4Q6MZW2 842 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SPESP1Q6UW49 350 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 ATG14Q6ZNE5 492 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 RPS27LQ71UM5 84 aaKnown RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 TTC39CQ8N584 583 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 AFG1LQ8WV93 481 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 GPATCH1Q9BRR8 931 aaKnown RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 CCDC28BQ9BUN5 200 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 C1orf50Q9BV19 199 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 OSBPL6Q9BZF3 934 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 RAD21L1Q9H4I0 556 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SNTG2Q9NY99 539 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 CCL22O00626 93 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 WDR47O94967 919 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 JAG1P78504 1218 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 PPP1R26Q5T8A7 1209 aaPredicted RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 CCDC117Q8IWD4 279 aaPredicted RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 NXNL1Q96CM4 212 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 HBEGFQ99075 208 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 TCF12Q99081 682 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SMAD5Q99717 465 aaKnown RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 BDH2Q9BUT1 245 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 RAB26Q9ULW5 256 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 FAM50BQ9Y247 325 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 IGKV6D-41A0A0C4DH26 115 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 TRAFD1O14545 582 aaPredicted RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 CDH17Q12864 832 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 VPS26BQ4G0F5 336 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SPANXN3Q5MJ09 141 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 NBPF12Q5TAG4 269 aaPredicted RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 ABRAXAS1Q6UWZ7 409 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 LDB1Q86U70 411 aaPredicted RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 ZC3H3Q8IXZ2 948 aaKnown RBP13.68□□□□□ -0.22
USP42-206ENST00000479544 RORBQ92753 470 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 COX4I2Q96KJ9 171 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 SH3GL1Q99961 368 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 OCEL1Q9H607 264 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 DUOX1Q9NRD9 1551 aa13.68□□□□□ -0.22
USP42-206ENST00000479544 ENDOD1O94919 500 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 H6PDO95479 791 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 PIRTP0C851 137 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 NCK1P16333 377 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TKTL1P51854 596 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SEMA5AQ13591 1074 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 FRG1Q14331 258 aaKnown RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 C11orf74Q86VG3 221 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 FNDC5Q8NAU1 212 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ACMSDQ8TDX5 336 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ACTRT2Q8TDY3 377 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 BORCS5Q969J3 196 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 OXCT2Q9BYC2 517 aaPredicted RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 SMARCAD1Q9H4L7 1026 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 NT5MQ9NPB1 228 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 HMGXB4Q9UGU5 601 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 RNF112Q9ULX5 631 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 KANSL1LA0AUZ9 987 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TMEM247A6NEH6 219 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 VWA5AO00534 786 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 GRM3Q14832 879 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 LIPMQ5VYY2 423 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SLC39A4Q6P5W5 647 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ZDHHC13Q8IUH4 622 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 POC5Q8NA72 575 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TRPC4APQ8TEL6 797 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 LPIN3Q9BQK8 851 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TRIM39Q9HCM9 518 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ZNF541Q9H0D2 1346 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ATP5BP06576 529 aaKnown RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 PABPC4LP0CB38 370 aaKnown RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 CCR1P32246 355 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 NR6A1Q15406 480 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 LRRC8DQ7L1W4 858 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 FAM126BQ8IXS8 530 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 SNX19Q92543 992 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 BHMTQ93088 406 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TMIGD2Q96BF3 282 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ELOVL4Q9GZR5 314 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 RIBC2Q9H4K1 309 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 PCDH12Q9NPG4 1184 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 ABT1Q9ULW3 272 aaKnown RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 PTPRJQ12913 1337 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 TSC22D2O75157 780 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 H2AFYO75367 372 aaKnown RBP13.67□□□□□ -0.22
USP42-206ENST00000479544 CTSHP09668 335 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 UGT1A6P19224 532 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 HLA-DPA1P20036 260 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 UGT1A1P22309 533 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 UGT1A4P22310 534 aa13.67□□□□□ -0.22
USP42-206ENST00000479544 UGT1A3P35503 534 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms