RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 SNX15Q9NRS6 342 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 ARL15Q9NXU5 204 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 PLK2Q9NYY3 685 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 APPL1Q9UKG1 709 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 TBC1D3BA6NDS4 549 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 IFRD1O00458 451 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-208ENST00000478423 LGR5O75473 907 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 GABRR2P28476 465 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 TTC7BQ86TV6 843 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 P3H2Q8IVL5 708 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 THAP11Q96EK4 314 aa14.38□□□□□ -0.11
NPHP4-208ENST00000478423 TRMT13Q9NUP7 481 aaKnown RBP14.38□□□□□ -0.11
NPHP4-208ENST00000478423 RGPD1P0DJD0 1748 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SPATA31D3P0C874 917 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 HPCAP84074 193 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 STXBP5Q5T5C0 1151 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 FBXL19Q6PCT2 694 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SPATA31D4Q6ZUB0 917 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 FUKQ8N0W3 1084 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 PTGR2Q8N8N7 351 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ERLEC1Q96DZ1 483 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 FAXDC2Q96IV6 333 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 CDRT15Q96T59 188 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 IGFLR1Q9H665 355 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 XPR1Q9UBH6 696 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 AGO1Q9UL18 857 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 RGPD5Q99666 1765 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 BCLAF3A2AJT9 711 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 YJEFN3A6XGL0 299 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 E7ENQ6 273 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 RAB10P61026 200 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SOWAHAQ2M3V2 549 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ANKRD22Q5VYY1 191 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 PIWIL4Q7Z3Z4 852 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 PATL1Q86TB9 770 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SPATA6LQ8N4H0 392 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ZNF557Q8N988 423 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 HJURPQ8NCD3 748 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 OR52K2Q8NGK3 314 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 TWNKQ96RR1 684 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SH3GL1Q99961 368 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 MECRQ9BV79 373 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ZCCHC18P0CG32 403 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ATXN1P54253 815 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 CRY1Q16526 586 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SH3PXD2AQ5TCZ1 1133 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 FAM120BQ96EK7 910 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 CNBD2Q96M20 576 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 RNF39Q9H2S5 420 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SLC17A7Q9P2U7 560 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 OPTCQ9UBM4 332 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 URB1O60287 2271 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 C1orf232A0A0U1RR37 186 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ZBTB14O43829 449 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SEC22BO75396 215 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SP100P23497 879 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 GRK3P35626 688 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 MAPK8P45983 427 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 GRIA4P48058 902 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 DAOAP59103 153 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SFSWAPQ12872 951 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 GALNT3Q14435 633 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 TTC33Q6PID6 262 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 OTOP3Q7RTS5 596 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 NKAPQ8N5F7 415 aaKnown RBP14.37□□□□□ -0.11
NPHP4-208ENST00000478423 PCDH19Q8TAB3 1148 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 LPIN3Q9BQK8 851 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 ATP13A3Q9H7F0 1226 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 VPS45Q9NRW7 570 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SH3BP4Q9P0V3 963 aa14.37□□□□□ -0.11
NPHP4-208ENST00000478423 SLC9A3R1O14745 358 aaPredicted RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 C2P06681 752 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 CFHP08603 1231 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 CYP2A6P11509 494 aaPredicted RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 LPOP22079 712 aaPredicted RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 TTPAP49638 278 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 RABGGTBP53611 331 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 FNDC3BQ53EP0 1204 aaKnown RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 ARHGAP17Q68EM7 881 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 MFSD5Q6N075 450 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 C16orf87Q6PH81 154 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 IZUMO2Q6UXV1 221 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 ZBTB49Q6ZSB9 765 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 ARCQ7LC44 396 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 C12orf50Q8NA57 414 aaPredicted RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 SLC44A1Q8WWI5 657 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 SUSD6Q92537 303 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 SERAC1Q96JX3 654 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 ASB2Q96Q27 587 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 FGF1P05230 155 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 TSPAN8P19075 237 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 ME2P23368 584 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 SMARCB1Q12824 385 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 WASHC2DQ5SRD0 308 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 RNASEH2BQ5TBB1 312 aaKnown RBP14.36□□□□□ -0.11
NPHP4-208ENST00000478423 SNX30Q5VWJ9 437 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 FAM45BPQ6NSW5 357 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 DSG4Q86SJ6 1040 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 TRAPPC5Q8IUR0 188 aa14.36□□□□□ -0.11
NPHP4-208ENST00000478423 FAM45AQ8TCE6 357 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms