RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TMEM110Q86TL2 294 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CREG2Q8IUH2 290 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TMEFF1Q8IYR6 380 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 LILRA2Q8N149 483 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 AHI1Q8N157 1196 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 FRMD1Q8N878 549 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF557Q8N988 423 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 WFIKKN2Q8TEU8 576 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 SHC3Q92529 594 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 PIGKQ92643 395 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TCEAL3Q969E4 200 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 AZIN2Q96A70 460 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 ERLEC1Q96DZ1 483 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TMA16Q96EY4 203 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 MRGPRX1Q96LB2 322 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TUBGCP2Q9BSJ2 902 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 EDEM2Q9BV94 578 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 KRTAP9-8Q9BYQ0 159 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CIPCQ9C0C6 399 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC6A17Q9H1V8 727 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CD248Q9HCU0 757 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 RXFP3Q9NSD7 469 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 ELOVL2Q9NXB9 296 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 MBD1Q9UIS9 605 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CNOT6Q9ULM6 557 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 PPM1HQ9ULR3 514 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CLEC4EQ9ULY5 219 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TLR6Q9Y2C9 796 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 RAD54BQ9Y620 910 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CNOT1A5YKK6 2376 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 SPTBN2O15020 2390 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 ASCC3Q8N3C0 2202 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 IGHV1OR15-9A0A0B4J2B8 117 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 LNP1A1A4G5 178 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 WASH3PC4AMC7 463 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 E5RJQ4 531 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 ACSL4O60488 711 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 TBL1XO60907 577 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 NDUFS2O75306 463 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 APOEP02649 317 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 FYNP06241 537 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PABPC1P11940 636 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC6A4P31645 630 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 HOXD12P35452 270 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 IL12RB1P42701 662 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PTGER3P43115 390 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SGSHP51688 502 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SNX16P57768 344 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 YWHAZP63104 245 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 APBA1Q02410 837 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 LMAN2Q12907 356 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PDCLQ13371 301 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF234Q14588 700 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 FUT11Q495W5 492 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 VWA3BQ502W6 1294 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 FNDC3BQ53EP0 1204 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 FAM133BQ5BKY9 247 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CT47A1Q5JQC4 288 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 MIIPQ5JXC2 388 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PIK3R6Q5UE93 754 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 RFWD3Q6PCD5 774 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 KIAA1324Q6UXG2 1013 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SERPINA13PQ6UXR4 307 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CHST9Q7L1S5 443 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 HDXQ7Z353 690 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 RABEPKQ7Z6M1 372 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 TAC4Q86UU9 113 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SYT12Q8IV01 421 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 HJURPQ8NCD3 748 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CEP76Q8TAP6 659 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 DQX1Q8TE96 717 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 SORCS1Q8WY21 1168 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 FCRL2Q96LA5 508 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 NOX5Q96PH1 765 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 GBP4Q96PP9 640 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 LHX5Q9H2C1 402 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 NDST4Q9H3R1 872 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PRDM16Q9HAZ2 1276 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 POPDC2Q9HBU9 364 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 ACP6Q9NPH0 428 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 ABCB8Q9NUT2 735 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 EVLQ9UI08 416 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CYTH4Q9UIA0 394 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 GGA2Q9UJY4 613 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 DNAJC12Q9UKB3 198 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PLA2G4CQ9UP65 541 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 NAALADL1Q9UQQ1 740 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CEP83Q9Y592 693 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 CACNA1EQ15878 2313 aa7.04□□□□□ -1.28
CCDC88A-213ENST00000476903 PCDH15Q96QU1 1955 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 GOLGA6L7A0A1B0GV03 622 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PATE3B3GLJ2 98 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 KCNJ18B7U540 433 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PES1O00541 588 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 PAPSS1O43252 624 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 HSF2BPO75031 334 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 MOCS2O96007 188 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 ATP5BP06576 529 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 EPHX1P07099 455 aa7.03□□□□□ -1.28
CCDC88A-213ENST00000476903 CELA3AP09093 270 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms