RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 OR12D3Q9UGF7 316 aa13.81□□□□□ -0.2
CHD3-209ENST00000473376 ZFR2Q9UPR6 939 aaKnown RBP13.81□□□□□ -0.2
CHD3-209ENST00000473376 WASF2Q9Y6W5 498 aa13.81□□□□□ -0.2
CHD3-209ENST00000473376 CBX4O00257 560 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 TRIM38O00635 465 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 SIGLEC6O43699 453 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 BNIP3LO60238 219 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 SRGAP2O75044 1071 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 PCDH8O95206 1070 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 PNMA6AP0CW24 399 aaPredicted RBP13.8□□□□□ -0.2
CHD3-209ENST00000473376 GLDCP23378 1020 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 ACTN2P35609 894 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 GGCXP38435 758 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 RABIFP47224 123 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 SUOXP51687 545 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 AIF1P55008 147 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 ARF5P84085 180 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 INSM1Q01101 510 aaPredicted RBP13.8□□□□□ -0.2
CHD3-209ENST00000473376 CDR2Q01850 454 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 CCDC157Q569K6 752 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 CDCP2Q5VXM1 449 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 CLEC17AQ6ZS10 378 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 TFAP2DQ7Z6R9 452 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 NLRP14Q86W24 1093 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 LSMEM2Q8N112 164 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 CHST14Q8NCH0 376 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 FGF11Q92914 225 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 NTAN1Q96AB6 310 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 UBL7Q96S82 380 aaPredicted RBP13.8□□□□□ -0.2
CHD3-209ENST00000473376 C1QTNF2Q9BXJ5 285 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 TMEM248Q9NWD8 314 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 NOCTQ9UK39 431 aaKnown RBP13.8□□□□□ -0.2
CHD3-209ENST00000473376 HPCAL4Q9UM19 191 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 FADS3Q9Y5Q0 445 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 BAHCC1Q9P281 2608 aa13.8□□□□□ -0.2
CHD3-209ENST00000473376 FASNP49327 2511 aaKnown RBP13.8□□□□□ -0.2
CHD3-209ENST00000473376 SPTY2D1-AS1A0A0U1RR47 76 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 H3BM21 787 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 TPP1O14773 563 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 DXOO77932 396 aaKnown RBP13.79□□□□□ -0.2
CHD3-209ENST00000473376 POP4O95707 220 aaKnown RBP13.79□□□□□ -0.2
CHD3-209ENST00000473376 CD160O95971 181 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 GSRP00390 522 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 CSF2P04141 144 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 MMEP08473 750 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 GIMD1P0DJR0 217 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 NME1P15531 152 aaKnown RBP13.79□□□□□ -0.2
CHD3-209ENST00000473376 SDC4P31431 198 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 CCNHP51946 323 aaPredicted RBP13.79□□□□□ -0.2
CHD3-209ENST00000473376 POLD3Q15054 466 aaPredicted RBP13.79□□□□□ -0.2
CHD3-209ENST00000473376 POM121L1PQ3SYA9 428 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 ZNF805Q5CZA5 627 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 TRNP1Q6NT89 227 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 IGF2-ASQ6U949 168 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 LINGO4Q6UY18 593 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 GCNT7Q6ZNI0 430 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 Q6ZSR6 202 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 FAM131BQ86XD5 332 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 MARCH9Q86YJ5 346 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 OR13H1Q8NG92 308 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 OR7D4Q8NG98 312 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 TPCN2Q8NHX9 752 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 HCAR2Q8TDS4 363 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 BMFQ96LC9 184 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 CFAP57Q96MR6 1250 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 SPON2Q9BUD6 331 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 NUP62CLQ9H1M0 184 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 DONSONQ9NYP3 566 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 AK5Q9Y6K8 562 aa13.79□□□□□ -0.2
CHD3-209ENST00000473376 IGSF10Q6WRI0 2623 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 C2CD4BA6NLJ0 364 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 MT-CO3P00414 261 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 TPM2P07951 284 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 UNGP13051 313 aaPredicted RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 PRLRP16471 622 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 SOX5P35711 763 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 JAM2P57087 298 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 SNRPD1P62314 119 aaKnown RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 DAB2P98082 770 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 SGCGQ13326 291 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 INO80DQ53TQ3 878 aaPredicted RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 NAA35Q5VZE5 725 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 PARGQ86W56 976 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 SLC22A18ASQ8N1D0 253 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 OR2AP1Q8NGE2 309 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 GRIN3AQ8TCU5 1115 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 BTN2A2Q8WVV5 523 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 CPA5Q8WXQ8 436 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 ARHGEF2Q92974 986 aaKnown RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 ZNF578Q96N58 590 aaPredicted RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 GANQ9H2C0 597 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 TNKS2Q9H2K2 1166 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 HECAQ9UBI9 543 aaPredicted RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 SALL4Q9UJQ4 1053 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 MFHAS1Q9Y4C4 1052 aa13.78□□□□□ -0.2
CHD3-209ENST00000473376 TP53BP1Q12888 1972 aaPredicted RBP13.78□□□□□ -0.2
CHD3-209ENST00000473376 LRRC10BA6NIK2 292 aa13.77□□□□□ -0.21
CHD3-209ENST00000473376 FPGTO14772 594 aa13.77□□□□□ -0.21
CHD3-209ENST00000473376 KDELR3O43731 214 aa13.77□□□□□ -0.21
CHD3-209ENST00000473376 OPA1O60313 960 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms