RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 IRF7Q92985 503 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 STAMBPL1Q96FJ0 436 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 PGM2Q96G03 612 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 OXNAD1Q96HP4 312 aaPredicted RBP13.03□□□□□ -0.32
VPS13D-205ENST00000473099 TBL1YQ9BQ87 522 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 MGME1Q9BQP7 344 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 IL22Q9GZX6 179 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 SMG9Q9H0W8 520 aaKnown RBP13.03□□□□□ -0.32
VPS13D-205ENST00000473099 SPHK2Q9NRA0 654 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 SAMD15Q9P1V8 674 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 ZC3H7BQ9UGR2 993 aaKnown RBP13.03□□□□□ -0.32
VPS13D-205ENST00000473099 VPS28Q9UK41 221 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 OR51B4Q9Y5P0 310 aa13.03□□□□□ -0.32
VPS13D-205ENST00000473099 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.03□□□□□ -0.32
VPS13D-205ENST00000473099 EXOC1LA0A1B0GW35 172 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 CBX4O00257 560 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 RFXAPO00287 272 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 RNF40O75150 1001 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 CDH16O75309 829 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 EPOP01588 193 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 CSKP41240 450 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ADAM15Q13444 863 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ATAT1Q5SQI0 421 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ZNF449Q6P9G9 518 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 TPGS1Q6ZTW0 290 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 CYS1Q717R9 158 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 TDRPQ86YL5 185 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 OR52K2Q8NGK3 314 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 OR2W6PQ8NHA6 318 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 PTCD2Q8WV60 388 aaKnown RBP13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ATP6V1G3Q96LB4 118 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 RIPOR3Q96MK2 946 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ZSWIM3Q96MP5 696 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ASB16Q96NS5 453 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 CYTH2Q99418 400 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ACSS3Q9H6R3 686 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 ARNT2Q9HBZ2 717 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 SLC24A2Q9UI40 661 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 MAD1L1Q9Y6D9 718 aa13.02□□□□□ -0.33
VPS13D-205ENST00000473099 F5H423 210 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 H3BQF6 201 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SCAMP3O14828 347 aaKnown RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 RGS16O15492 202 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 AVILO75366 819 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 BANF1O75531 89 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ZMPSTE24O75844 475 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 NFATC1O95644 943 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ADH1CP00326 375 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 AGTP01019 485 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SHBGP04278 402 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 POLBP06746 335 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SERPINF2P08697 491 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 PGAM1P18669 254 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 CA4P22748 312 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SSTR1P30872 391 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ADRA1AP35348 466 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 MTHFRP42898 656 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SESN2P58004 480 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ARF5P84085 180 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SULT2A1Q06520 285 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 NSUN2Q08J23 767 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 NR1H3Q13133 447 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 LAMB3Q13751 1172 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 FRG1Q14331 258 aaKnown RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 FSCBQ5H9T9 825 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SPANXN3Q5MJ09 141 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 STEAP4Q687X5 459 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 CASC4Q6P4E1 433 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 POTEHQ6S545 545 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 KDELC1Q6UW63 502 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 IPMKQ8NFU5 416 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 OR52K1Q8NGK4 314 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 SPATA22Q8NHS9 363 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 GSDMBQ8TAX9 411 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 BPIFB1Q8TDL5 484 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 OSCP1Q8WVF1 389 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 FGF13Q92913 245 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 TADA1Q96BN2 335 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ALG14Q96F25 216 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ZNF419Q96HQ0 510 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 FAM161BQ96MY7 647 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 BBS2Q9BXC9 721 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 THG1LQ9NWX6 298 aaKnown RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 CDH7Q9ULB5 785 aa13.01□□□□□ -0.33
VPS13D-205ENST00000473099 ARIH1Q9Y4X5 557 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-205ENST00000473099 EYSQ5T1H1 3165 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 BRWD1Q9NSI6 2320 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 FAM237BA0A1B0GVD1 139 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 PMPCBO75439 489 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 MT-CYBP00156 380 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 HLA-DPA1P20036 260 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 POU3F3P20264 500 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 MGAT1P26572 445 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 MZF1P28698 734 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 CD86P42081 329 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 GRIA1P42261 906 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 MAPK8P45983 427 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 WNT3AP56704 352 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 GPX6P59796 221 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 DSC2Q02487 901 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms