RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ARHGAP20Q9P2F6 1191 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 NEU3Q9UQ49 428 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 COL5A1P20908 1838 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 KNTC1P50748 2209 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TMCO5BA8MYB1 307 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TLR4O00206 839 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TNFSF14O43557 240 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 DFNA5O60443 496 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 RNGTTO60942 597 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF821O75541 412 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 LEFTY1O75610 366 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TNFAIP3P21580 790 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 MAPKAPK2P49137 400 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 NXPH1P58417 271 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 RPL7AP62424 266 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 SLC20A2Q08357 652 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 ACAP1Q15027 740 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 INAVAQ3KP66 663 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 FILIP1LQ4L180 1135 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 SETMARQ53H47 684 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 ACAD10Q6JQN1 1059 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 SLFN11Q7Z7L1 901 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 PDZD3Q86UT5 571 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 NLRP14Q86W24 1093 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 PYROXD2Q8N2H3 581 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 PCDH20Q8N6Y1 951 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 HNRNPLLQ8WVV9 542 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 BAP1Q92560 729 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 ARHGEF2Q92974 986 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 NTAN1Q96AB6 310 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TM6SF2Q9BZW4 377 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 CEP44Q9C0F1 390 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 TAS2R14Q9NYV8 317 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 DMTF1Q9Y222 760 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 CA5BQ9Y2D0 317 aa16.03■□□□□ 0.16
CCDC88B-205ENST00000472524 A0A1W2PQU0 124 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 TCRBV5S1A1TA0A578 114 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 TRABD2BA6NFA1 517 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 LRRC53A6NM62 1247 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 SLC31A1O15431 190 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 PRLRP16471 622 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 NUDT1P36639 197 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ETFBP38117 255 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF165P49910 485 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 CCNHP51946 323 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF143P52747 638 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 CYP4F3Q08477 520 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 CCDC15Q0P6D6 951 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 STAT4Q14765 748 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 SHBQ15464 509 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ASIC2Q16515 512 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 CARD16Q5EG05 197 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 EFHC2Q5JST6 749 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 DCUN1D2Q6PH85 259 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 LEKR1Q6ZMV7 388 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ERN2Q76MJ5 926 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 IRF2BP2Q7Z5L9 587 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF354CQ86Y25 554 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 MCOLN2Q8IZK6 566 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 RYBPQ8N488 228 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 MFSD2AQ8NA29 543 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 PPP1R16AQ96I34 528 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 HEPHQ9BQS7 1158 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 ZDHHC6Q9H6R6 413 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 WASF2Q9Y6W5 498 aa16.02■□□□□ 0.16
CCDC88B-205ENST00000472524 MYLKQ15746 1914 aa16.02■□□□□ 0.15
CCDC88B-205ENST00000472524 LRRK1Q38SD2 2015 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 ATMINO43313 823 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 CREB3O43889 395 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 RAMP2O60895 175 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 PCDH8O95206 1070 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 ITGAVP06756 1048 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 CAMK2BQ13554 666 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 POLD3Q15054 466 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 SMAD1Q15797 465 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 SOWAHCQ53LP3 525 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 PPP1R15BQ5SWA1 713 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 DHRS13Q6UX07 377 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 SPATS2Q86XZ4 545 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 GALNT15Q8N3T1 639 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 OR6K2Q8NGY2 324 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 MAGEH1Q9H213 219 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 FZD3Q9NPG1 666 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 FTSJ1Q9UET6 329 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 HPCAL4Q9UM19 191 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 MYO6Q9UM54 1294 aa16.01■□□□□ 0.15
CCDC88B-205ENST00000472524 PRAMEF26H0Y7S4 382 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 YKT6O15498 198 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 CD160O95971 181 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 DESP17661 470 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 EPHA8P29322 1005 aaPredicted RBP16■□□□□ 0.15
CCDC88B-205ENST00000472524 EPHB2P29323 1055 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 L1CAMP32004 1257 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 GKP32189 559 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 ARRB1P49407 418 aaPredicted RBP16■□□□□ 0.15
CCDC88B-205ENST00000472524 NEK3P51956 506 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 OGDHQ02218 1023 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 HORMAD1Q86X24 394 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 DNAAF5Q86Y56 855 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 OXR1Q8N573 874 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms