RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 FAM13CQ8NE31 585 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 OR13C4Q8NGS5 318 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RPL10LQ96L21 214 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 NKX1-2Q9UD57 310 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 DSEQ9UL01 958 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 ACOT9Q9Y305 439 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 ACTL7BQ9Y614 415 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 ARL5AQ9Y689 179 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 TLL2Q9Y6L7 1015 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 CCDC166P0CW27 439 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC8A1P32418 973 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 CDK16Q00536 496 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 OCRLQ01968 901 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 TDRD5Q8NAT2 981 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 PYDC1Q8WXC3 89 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 ARNTL2Q8WYA1 636 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 SERPINB11Q96P15 392 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 APOL5Q9BWW9 433 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 ADA2Q9NZK5 511 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 CIDEBQ9UHD4 219 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 C5orf42Q9H799 3197 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 E7ESA3 106 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 TAS2R39P59534 338 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 TRIM42Q8IWZ5 723 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 SHKBP1Q8TBC3 707 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 ZNF296Q8WUU4 475 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 SEPT8Q92599 483 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 ATP6V1E2Q96A05 226 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 VPS28Q9UK41 221 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 TET1Q8NFU7 2136 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 HACD1B0YJ81 288 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 CCDC22O60826 627 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 FMO4P31512 558 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 NUDT2P50583 147 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 XRCC4Q13426 336 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 BTG3Q14201 252 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 KIF19Q2TAC6 998 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 SGO1Q5FBB7 561 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 TREML1Q86YW5 311 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 FAM156AQ8NDB6 213 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 DDI1Q8WTU0 396 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 ACE2Q9BYF1 805 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 MAF1Q9H063 256 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 NOP53Q9NZM5 478 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 FBXO5Q9UKT4 447 aa13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 RBBP6Q7Z6E9 1792 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-211ENST00000471947 KCNU1A8MYU2 1149 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TCEA3O75764 348 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 ANXA9O76027 345 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 AHSGP02765 367 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 CHRM3P20309 590 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TLE2Q04725 743 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 GRAMD1BQ3KR37 738 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 PIK3R6Q5UE93 754 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TDRPQ86YL5 185 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 ATP6V0D2Q8N8Y2 350 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC45A3Q96JT2 553 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 DENND2DQ9H6A0 471 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TLR8Q9NR97 1041 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 GIMAP2Q9UG22 337 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 HMX2A2RU54 273 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SNAP91O60641 907 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 PLIN3O60664 434 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SH3BGRLO75368 114 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 STAU1O95793 577 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 ALDH1A3P47895 512 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 GRIA4P48058 902 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SERPINB8P50452 374 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 DPYSQ14117 519 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 RABGAP1LQ5R372 815 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 ARMC12Q5T9G4 340 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 RSPO2Q6UXX9 243 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 YTHDF3Q7Z739 585 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 DEFB107AQ8IZN7 70 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 CENPIQ92674 756 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 MTBPQ96DY7 904 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 KIF13BQ9NQT8 1826 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 CFAP73A6NFT4 308 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SMAPO00193 183 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 CLGNO14967 610 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 MYL4P12829 197 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TPSB2P20231 275 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TPSAB1Q15661 275 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 SH2D4BQ5SQS7 431 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 RIPOR1Q6ZS17 1223 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 MON1AQ86VX9 555 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 CDC26Q8NHZ8 85 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 GBA3Q9H227 469 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TLR9Q9NR96 1032 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 TMEM39AQ9NV64 488 aa13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 AAR2Q9Y312 384 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-211ENST00000471947 RASSF9O75901 435 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 ALADP13716 330 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PAMP19021 973 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 SPDYAQ5MJ70 313 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PDPK2PQ6A1A2 396 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 TMC7Q7Z402 723 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 MAB21L3Q8N8X9 362 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 RBM15BQ8NDT2 890 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms