RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SPANXN3Q5MJ09 141 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 RNF219Q5W0B1 726 aaPredicted RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 CASC4Q6P4E1 433 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 TAOK1Q7L7X3 1001 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 RBM23Q86U06 439 aaKnown RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 PRPF39Q86UA1 669 aaKnown RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 MFN1Q8IWA4 741 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CNPY4Q8N129 248 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 PGBD5Q8N414 524 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CARNMT1Q8N4J0 409 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 KIAA1958Q8N8K9 716 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 DNAAF3Q8N9W5 541 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SLC44A1Q8WWI5 657 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SMG7Q92540 1137 aaKnown RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 PPP2R3CQ969Q6 453 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 MRGPRX2Q96LB1 330 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 PSKH2Q96QS6 385 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 MGME1Q9BQP7 344 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SPON2Q9BUD6 331 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 FICDQ9BVA6 458 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CINPQ9BW66 212 aaPredicted RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 FSD1LQ9BXM9 530 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SMG9Q9H0W8 520 aaKnown RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 KIF9Q9HAQ2 790 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 UBP1Q9NZI7 540 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SEPT3Q9UH03 358 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CCL26Q9Y258 94 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 OR51B4Q9Y5P0 310 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 ACTL7BQ9Y614 415 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 FAM237BA0A1B0GVD1 139 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 EPOPA6NHQ4 379 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 FAM159BA6NKW6 160 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 A6NNZ2 444 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 POC1B-GALNT4F8VUJ3 575 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 CBX4O00257 560 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 PMPCBO75439 489 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ZMPSTE24O75844 475 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 USP1O94782 785 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ALDH1A2O94788 518 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 PENKP01210 267 aaPredicted RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 CYBBP04839 570 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 POLBP06746 335 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MMP2P08253 660 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 CEBPBP17676 345 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 GLDCP23378 1020 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 BMP8BP34820 402 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 CSKP41240 450 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 CD86P42081 329 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MSH2P43246 934 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 WNT3AP56704 352 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MAXP61244 160 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 CRADDP78560 199 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ARF5P84085 180 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 DSC2Q02487 901 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ITKQ08881 620 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 NIPAL4Q0D2K0 466 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 TUBB8Q3ZCM7 444 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 KBTBD12Q3ZCT8 623 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 FSCBQ5H9T9 825 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ZNF697Q5TEC3 545 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 DENND5AQ6IQ26 1287 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ADGRD1Q6QNK2 874 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 RANBP10Q6VN20 620 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MARK2Q7KZI7 788 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 TMEM135Q86UB9 458 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 EXOC3L1Q86VI1 746 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ZNF557Q8N988 423 aaPredicted RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 TTC16Q8NEE8 873 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 VN1R2Q8NFZ6 395 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 RIN3Q8TB24 985 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 DDI1Q8WTU0 396 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 PTCD2Q8WV60 388 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 DCAKDQ8WVC6 231 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 TTC17Q96AE7 1141 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 OTUB2Q96DC9 234 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MRPL38Q96DV4 380 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 ALG14Q96F25 216 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 APOL2Q9BQE5 337 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 TRIM56Q9BRZ2 755 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 FEM1AQ9BSK4 669 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 C2orf49Q9BVC5 232 aaPredicted RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 CNOT10Q9H9A5 744 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 PIDD1Q9HB75 910 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ARNT2Q9HBZ2 717 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 PIH1D1Q9NWS0 290 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 PSD3Q9NYI0 1048 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MOCS1Q9NZB8 636 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 SENP1Q9P0U3 644 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 TBC1D14Q9P2M4 693 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 ZNF180Q9UJW8 692 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 VPS28Q9UK41 221 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 SOX13Q9UN79 622 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 MRPS23Q9Y3D9 190 aaKnown RBP9.52□□□□□ -0.89
VPS52-216ENST00000471309 MYLKQ15746 1914 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 C2orf16Q68DN1 1984 aa9.52□□□□□ -0.89
VPS52-216ENST00000471309 KIF26AQ9ULI4 1882 aaPredicted RBP9.51□□□□□ -0.89
VPS52-216ENST00000471309 MIA3Q5JRA6 1907 aa9.51□□□□□ -0.89
VPS52-216ENST00000471309 SLC9A3R1O14745 358 aaPredicted RBP9.51□□□□□ -0.89
VPS52-216ENST00000471309 MUSKO15146 869 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms