RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 VPS16Q9H269 839 aa17.83■□□□□ 0.44
COL7A1-208ENST00000470076 FZD3Q9NPG1 666 aa17.83■□□□□ 0.44
COL7A1-208ENST00000470076 ZFR2Q9UPR6 939 aaKnown RBP17.83■□□□□ 0.44
COL7A1-208ENST00000470076 TRIM38O00635 465 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 SIGLEC6O43699 453 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 ADRB3P13945 408 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 DGKAP23743 735 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 L1CAMP32004 1257 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 SOX5P35711 763 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 PTPN9P43378 593 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 MAPKAPK2P49137 400 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 DNA2P51530 1060 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 CCNHP51946 323 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 GEMIN4P57678 1058 aaKnown RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 POLR2FP61218 127 aaKnown RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 RPS21P63220 83 aaKnown RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 FMO1Q01740 532 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 CDO1Q16878 200 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 FKBP15Q5T1M5 1219 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 MANEALQ5VSG8 457 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 CDKAL1Q5VV42 579 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 SEL1L3Q68CR1 1132 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 GCNT7Q6ZNI0 430 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 STRADAQ7RTN6 431 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 ZSCAN30Q86W11 494 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 DCP2Q8IU60 420 aaKnown RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 OR4C6Q8NH72 309 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 RFFLQ8WZ73 363 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 FEM1CQ96JP0 617 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 NRSN2Q9GZP1 204 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 OSBPL2Q9H1P3 480 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 FAM207AQ9NSI2 230 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-208ENST00000470076 HS3ST3A1Q9Y663 406 aa17.82■□□□□ 0.44
COL7A1-208ENST00000470076 C2CD4BA6NLJ0 364 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 A6NNZ2 444 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 AP1G1O43747 822 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 RHOQP17081 205 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 CHRNB2P17787 502 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 JAM2P57087 298 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 CLDN2P57739 230 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 E2F1Q01094 437 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 COL9A2Q14055 689 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-208ENST00000470076 RTP5Q14D33 572 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 KRT31Q15323 416 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 C15orf59Q2T9L4 293 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-208ENST00000470076 CCDC14Q49A88 953 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 RWDD4Q6NW29 188 aaKnown RBP17.81■□□□□ 0.44
COL7A1-208ENST00000470076 LRIG1Q96JA1 1093 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 C11orf70Q9BRQ4 267 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 SLC17A9Q9BYT1 436 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 NLRC4Q9NPP4 1024 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 TMEM248Q9NWD8 314 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 HECAQ9UBI9 543 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-208ENST00000470076 FCF1Q9Y324 198 aaKnown RBP17.81■□□□□ 0.44
COL7A1-208ENST00000470076 FADS3Q9Y5Q0 445 aa17.81■□□□□ 0.44
COL7A1-208ENST00000470076 ASXL3Q9C0F0 2248 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 PIAS2O75928 621 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 CD160O95971 181 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 ALPPL2P10696 532 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 ACVRL1P37023 503 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 STAT1P42224 750 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 KLK7P49862 253 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 DAB2P98082 770 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 MAPK8IP2Q13387 824 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-208ENST00000470076 RAB6CQ53S08 254 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 Q6ZSR6 202 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 NLRP14Q86W24 1093 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 SLC22A18ASQ8N1D0 253 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 JOSD2Q8TAC2 188 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 SLC30A5Q8TAD4 765 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 GPT2Q8TD30 523 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 CENPIQ92674 756 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-208ENST00000470076 ARHGEF2Q92974 986 aaKnown RBP17.8■□□□□ 0.44
COL7A1-208ENST00000470076 RAB7BQ96AH8 199 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 TM6SF2Q9BZW4 377 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 RAB6CQ9H0N0 254 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 MAGEH1Q9H213 219 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 ZDHHC6Q9H6R6 413 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 NDFIP2Q9NV92 336 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 UCKL1Q9NWZ5 548 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 HPCAL4Q9UM19 191 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 CLCA2Q9UQC9 943 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 AK5Q9Y6K8 562 aa17.8■□□□□ 0.44
COL7A1-208ENST00000470076 NEMP2A6NFY4 417 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 TSPAN6O43657 245 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 LRIG2O94898 1065 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 PAK4O96013 591 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 KRT3P12035 628 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 UNGP13051 313 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 NSFP46459 744 aaKnown RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 GSCP56915 257 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 HNRNPKP61978 463 aaKnown RBP eCLIP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 INSM1Q01101 510 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 PTP4A2Q12974 167 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 POLD3Q15054 466 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 KYAT3Q6YP21 454 aaKnown RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 CLEC17AQ6ZS10 378 aa17.79■□□□□ 0.44
COL7A1-208ENST00000470076 PARS2Q7L3T8 475 aaKnown RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 PTAR1Q7Z6K3 402 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-208ENST00000470076 PHLDB2Q86SQ0 1253 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms