RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 C10orf107Q8IVU9 208 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 AMER2Q8N7J2 671 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SPPL2AQ8TCT8 520 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 MAPRE3Q9UPY8 281 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 COL5A2P05997 1499 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 MLYCDO95822 493 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CYP2A7P20853 494 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CRADDP78560 199 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 ARMC6Q6NXE6 501 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 NECAB2Q7Z6G3 386 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC41A1Q8IVJ1 513 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 TMEM86AQ8N2M4 240 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 NMUR2Q9GZQ4 415 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 FANCEQ9HB96 536 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 PLA2G4CQ9UP65 541 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 LTFP02788 710 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 LYNP07948 512 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 S100A3P33764 101 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 TBX4P57082 545 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 PPIL2Q13356 520 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 ATXN3LQ9H3M9 355 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 DENND2DQ9H6A0 471 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 CRNNQ9UBG3 495 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 NOMO1Q15155 1222 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 VSIG10LQ86VR7 867 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 EDEM1Q92611 657 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 KREMEN1Q96MU8 473 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 REEP1Q9H902 201 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 DHRS12A0PJE2 317 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 URODP06132 367 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 DGCR6Q14129 220 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 RBM15BQ8NDT2 890 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 ENKURQ8TC29 256 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 TRMOQ9BU70 441 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 TLR8Q9NR97 1041 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 COG5Q9UP83 839 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 DPPA5A6NC42 116 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 H3BRB1 525 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 BTN3A1O00481 513 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 ENDOD1O94919 500 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 EIF2B5Q13144 721 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 TYW3Q6IPR3 259 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 CCDC149Q6ZUS6 474 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 GPSM1Q86YR5 675 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 ELOVL4Q9GZR5 314 aa19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 TUT1Q9H6E5 874 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-204ENST00000463837 MANSC4A6NHS7 340 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 CYP1B1Q16678 543 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 MAN1C1Q9NR34 630 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 PROSER1Q86XN7 944 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 HERC6Q8IVU3 1022 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 HOPXQ9BPY8 73 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 WDR12Q9GZL7 423 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 CATSPERZQ9NTU4 200 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 CNTNAP2Q9UHC6 1331 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 EFCAB10A6NFE3 127 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 TCEA3O75764 348 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 GSTM1P09488 218 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 ENPEPQ07075 957 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 SPIRE1Q08AE8 756 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 GRIK4Q16099 956 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 LPCAT1Q8NF37 534 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 SPATC1LQ9H0A9 340 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 STARD7Q9NQZ5 370 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 RPTORQ8N122 1335 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM25AB3EWG3 89 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM25CB3EWG5 89 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM25GB3EWG6 89 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 SPTLC1O15269 473 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 MMP8P22894 467 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 POLD2P49005 469 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 RAB27AP51159 221 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 SCNN1BP51168 640 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 CAMK2GQ13555 558 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 TKTL2Q9H0I9 626 aa19.21■□□□□ 0.67
CCDC88B-204ENST00000463837 CCDC166P0CW27 439 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 KLF10Q13118 480 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 OOSP2Q86WS3 158 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 KBTBD8Q8NFY9 601 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 ALG9Q9H6U8 611 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 CDH22Q9UJ99 828 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 H3BMM5 538 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 EPB42P16452 691 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 PPP2R1BP30154 601 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 GPC1P35052 558 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 AIF1P55008 147 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 IL2P60568 153 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 RPS7P62081 194 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 CCNB1IP1Q9NPC3 277 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 AHSPQ9NZD4 102 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 COL6A2P12110 1019 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 ARMC3Q5W041 872 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 DRICH1Q6PGQ1 229 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 IL27RAQ6UWB1 636 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 APTXQ7Z2E3 356 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF513Q8N8E2 541 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 MECRQ9BV79 373 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 MUC13Q9H3R2 512 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 UBAP1Q9NZ09 502 aa19.2■□□□□ 0.66
CCDC88B-204ENST00000463837 RPS6KA6Q9UK32 745 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms