RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MLPHQ9BV36 600 aaPredicted RBP11.18□□□□□ -0.62
SCN9A-205ENST00000454569 BRD8Q9H0E9 1235 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 MTG2Q9H4K7 406 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 BRD9Q9H8M2 597 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 ETNK1Q9HBU6 452 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 NT5MQ9NPB1 228 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 UBP1Q9NZI7 540 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 SLCO3A1Q9UIG8 710 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 FCF1Q9Y324 198 aaKnown RBP11.18□□□□□ -0.62
SCN9A-205ENST00000454569 LOC730098B7Z3J9 87 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 GAS8O95995 478 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 MMP2P08253 660 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ADCY8P40145 1251 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 GRIA1P42261 906 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 GCGRP47871 477 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ITGA8P53708 1063 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 DSC2Q02487 901 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ZNF33AQ06730 810 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 MTM1Q13496 603 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 HNRNPDQ14103 355 aaKnown RBP11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ITPRIPL2Q3MIP1 535 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 DGKKQ5KSL6 1271 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 EMC10Q5UCC4 262 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 IZUMO3Q5VZ72 239 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 MBLAC2Q68D91 279 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 LRRC49Q8IUZ0 686 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.17□□□□□ -0.62
SCN9A-205ENST00000454569 DCAF4L2Q8NA75 395 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 IFT81Q8WYA0 676 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 MYO19Q96H55 970 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 OXNAD1Q96HP4 312 aaPredicted RBP11.17□□□□□ -0.62
SCN9A-205ENST00000454569 EXOC2Q96KP1 924 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 MRGPRX3Q96LB0 322 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 RUNDC3BQ96NL0 473 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 RAB6BQ9NRW1 208 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ZDHHC18Q9NUE0 388 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 DONSONQ9NYP3 566 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 KLHL8Q9P2G9 620 aaPredicted RBP11.17□□□□□ -0.62
SCN9A-205ENST00000454569 FEZ2Q9UHY8 353 aaPredicted RBP11.17□□□□□ -0.62
SCN9A-205ENST00000454569 ATP8A1Q9Y2Q0 1164 aa11.17□□□□□ -0.62
SCN9A-205ENST00000454569 TARSL2A2RTX5 802 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 DNALI1O14645 258 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 INSIG1O15503 277 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TMCC1O94876 653 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TMEM63AO94886 807 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SEC31AO94979 1220 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 MT-CYBP00156 380 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 FAM153BP0C7A2 387 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SRCP12931 536 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 GALK1P51570 392 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SPARCL1Q14515 664 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 PTPRNQ16849 979 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 FAM153CQ494X1 144 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 UBAP2Q5T6F2 1119 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 RNASEH2BQ5TBB1 312 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TMCO4Q5TGY1 634 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 MARC1Q5VT66 337 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TIGD7Q6NT04 549 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 CCNI2Q6ZMN8 369 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SYDE1Q6ZW31 735 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 CPA6Q8N4T0 437 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ARRDC2Q8TBH0 407 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 FBXO25Q8TCJ0 367 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ANKRD7Q92527 254 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 FATE1Q969F0 183 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TTC17Q96AE7 1141 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 XPO6Q96QU8 1125 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SLC2A11Q9BYW1 496 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 GLOD4Q9HC38 313 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 HEBP1Q9NRV9 189 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 LHX3Q9UBR4 397 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 UBA2Q9UBT2 640 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 FAM153AQ9UHL3 310 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 RABGEF1Q9UJ41 708 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 NFU1Q9UMS0 254 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SLC27A6Q9Y2P4 619 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 UTP11Q9Y3A2 253 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 TTLL3Q9Y4R7 772 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 CKAP5Q14008 2032 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 DOCK9Q9BZ29 2069 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 GOLGA8MH3BSY2 632 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ARHGAP33O14559 1287 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 GKP32189 559 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 MMP13P45452 471 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 PLTPP55058 493 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 BASP1P80723 227 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 KCNJ11Q14654 390 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SWT1Q5T5J6 900 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ATXN7L2Q5T6C5 722 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 GRAMD4Q6IC98 578 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 HIBCHQ6NVY1 386 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ARHGEF18Q6ZSZ5 1173 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 PRPF39Q86UA1 669 aaKnown RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 CCDC117Q8IWD4 279 aaPredicted RBP11.16□□□□□ -0.62
SCN9A-205ENST00000454569 AGGF1Q8N302 714 aaeCLIP11.16□□□□□ -0.621e-10■□□□□ 9.6
SCN9A-205ENST00000454569 ZNF366Q8N895 744 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 NAT8LQ8N9F0 302 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 ART4Q93070 314 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 SNF8Q96H20 258 aa11.16□□□□□ -0.62
SCN9A-205ENST00000454569 RBM15Q96T37 977 aaKnown RBP eCLIP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms