RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 MCEEQ96PE7 176 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 BPIFA3Q9BQP9 254 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 HEPHQ9BQS7 1158 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 HDAC8Q9BY41 377 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 MAGEH1Q9H213 219 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 ERVMER34-1Q9H9K5 563 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 NDFIP2Q9NV92 336 aa13.15□□□□□ -0.3
CHD3-206ENST00000452447 FCF1Q9Y324 198 aaKnown RBP13.15□□□□□ -0.3
CHD3-206ENST00000452447 APC2O95996 2303 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 PKD1L2Q7Z442 2459 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ZFHX4Q86UP3 3567 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 CXorf51AA0A1B0GTR3 108 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 A0A1W2PQU0 124 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 TEX33O43247 280 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 RAMP2O60895 175 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ZNF821O75541 412 aaPredicted RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 TNFAIP3P21580 790 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ACVRL1P37023 503 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 NEK3P51956 506 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 POLD3Q15054 466 aaPredicted RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 EFHC2Q5JST6 749 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ACAD10Q6JQN1 1059 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 CAVIN1Q6NZI2 390 aaKnown RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 FBXL19Q6PCT2 694 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 NLRP14Q86W24 1093 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 HORMAD1Q86X24 394 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ZNF354CQ86Y25 554 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 RYBPQ8N488 228 aaPredicted RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 SAP25Q8TEE9 199 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 ISG20Q96AZ6 181 aaKnown RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 MAGEB5Q9BZ81 275 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 RTN4Q9NQC3 1192 aaKnown RBP13.14□□□□□ -0.31
CHD3-206ENST00000452447 TOR4AQ9NXH8 423 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 MYO6Q9UM54 1294 aa13.14□□□□□ -0.31
CHD3-206ENST00000452447 DSPP15924 2871 aaKnown RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 CCP110O43303 1012 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 PRLRP16471 622 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 EPHA8P29322 1005 aaPredicted RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 EPHB2P29323 1055 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 L1CAMP32004 1257 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 CCNHP51946 323 aaPredicted RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 RPL7AP62424 266 aaKnown RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 SCAPQ12770 1279 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 SHBQ15464 509 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 PPP1R2P3Q6NXS1 205 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 MCOLN2Q8IZK6 566 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 GALNT15Q8N3T1 639 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 KLK6Q92876 244 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 KLHDC7BQ96G42 594 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 MYOCQ99972 504 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 CNPY3Q9BT09 278 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 TM6SF2Q9BZW4 377 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 ZDHHC6Q9H6R6 413 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 HECAQ9UBI9 543 aaPredicted RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 WASF2Q9Y6W5 498 aa13.13□□□□□ -0.31
CHD3-206ENST00000452447 URB1O60287 2271 aaKnown RBP13.13□□□□□ -0.31
CHD3-206ENST00000452447 CELSR3Q9NYQ7 3312 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 ZSCAN5CA6NGD5 496 aaPredicted RBP13.12□□□□□ -0.31
CHD3-206ENST00000452447 TMCO5BA8MYB1 307 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 CREB3O43889 395 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 ADRB3P13945 408 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 ITGB7P26010 798 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 AKT2P31751 481 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 RXRGP48443 463 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 ZNF165P49910 485 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 AIF1P55008 147 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 SNRPD1P62314 119 aaKnown RBP13.12□□□□□ -0.31
CHD3-206ENST00000452447 CCNI2Q6ZMN8 369 aaPredicted RBP13.12□□□□□ -0.31
CHD3-206ENST00000452447 TMPRSS7Q7RTY8 843 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 IRF2BP2Q7Z5L9 587 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 SPATS2Q86XZ4 545 aaKnown RBP13.12□□□□□ -0.31
CHD3-206ENST00000452447 PLPP6Q8IY26 295 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 PYROXD2Q8N2H3 581 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 EID2Q8N6I1 236 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 LRIG1Q96JA1 1093 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 VCPIP1Q96JH7 1222 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 EPAS1Q99814 870 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 NEU3Q9UQ49 428 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 CA5BQ9Y2D0 317 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 ACTL7AQ9Y615 435 aa13.12□□□□□ -0.31
CHD3-206ENST00000452447 COL5A1P20908 1838 aaPredicted RBP13.12□□□□□ -0.31
CHD3-206ENST00000452447 TCRBV5S1A1TA0A578 114 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 LRRC53A6NM62 1247 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 RNF103O00237 685 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 BUB1O43683 1085 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 KDELR3O43731 214 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 LDOC1O95751 146 aaPredicted RBP13.11□□□□□ -0.31
CHD3-206ENST00000452447 THEGLP0DJG4 465 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 HNRNPA2B1P22626 353 aaKnown RBP13.11□□□□□ -0.31
CHD3-206ENST00000452447 RPS21P63220 83 aaKnown RBP13.11□□□□□ -0.31
CHD3-206ENST00000452447 BNIP3Q12983 259 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 ASIC2Q16515 512 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 ZNF284Q2VY69 593 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 SEL1L3Q68CR1 1132 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 LEKR1Q6ZMV7 388 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 RTL3Q8N8U3 475 aaKnown RBP13.11□□□□□ -0.31
CHD3-206ENST00000452447 TMEM145Q8NBT3 493 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 OR2AP1Q8NGE2 309 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 OR6K2Q8NGY2 324 aa13.11□□□□□ -0.31
CHD3-206ENST00000452447 BAP1Q92560 729 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms