RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 JAMLQ86YT9 394 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 STK40Q8N2I9 435 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 SYNPOQ8N3V7 929 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PNLDC1Q8NA58 520 aaKnown RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 SPACA7Q96KW9 195 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NECAB3Q96P71 396 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 C9P02748 559 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PHKG2P15735 406 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PPM1AP35813 382 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 RENBPP51606 427 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 KCNMA1Q12791 1236 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PITRM1Q5JRX3 1037 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CCDC71Q8IV32 467 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 FBXO39Q8N4B4 442 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 C1GALT1C1Q96EU7 318 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 DIRAS2Q96HU8 199 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PMF1-BGLAPU3KQ54 211 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NCF1BA6NI72 391 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NCF1CA8MVU1 366 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 FTH1P02794 183 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NCF1P14598 390 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PNPLA4P41247 253 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 MGAT5Q09328 741 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 FBXO47Q5MNV8 452 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NSUN6Q8TEA1 469 aaKnown RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF578Q96N58 590 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 TRNAU1APQ9NX07 287 aaKnown RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CFTRP13569 1480 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 KIF14Q15058 1648 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 RIMS2Q9UQ26 1411 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 SPTLC1O15269 473 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 GMFGO60234 142 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 AVILO75366 819 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 LIFRP42702 1097 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 NPTX2P47972 431 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CLK2P49760 499 aaKnown RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PTPN5P54829 565 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ESPL1Q14674 2120 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM121BQ9BXQ6 578 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 RAB26Q9ULW5 256 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 DNAJC16Q9Y2G8 782 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 TRPV2Q9Y5S1 764 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 F5H5T6 163 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ARPC2O15144 300 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 OR10H2O60403 315 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 PGRP06401 933 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CYP2A13Q16696 494 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ARSKQ6UWY0 536 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ARHGAP36Q6ZRI8 547 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CFAP206Q8IYR0 622 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 ETNPPLQ8TBG4 499 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 HEXDCQ8WVB3 486 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 SMG7Q92540 1137 aaKnown RBP9.03□□□□□ -0.96
NIPBL-202ENST00000448238 HTRA1Q92743 480 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 CHP1Q99653 195 aa9.03□□□□□ -0.96
NIPBL-202ENST00000448238 J3QR89 54 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 KCNQ3O43525 872 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 GNRH1P01148 92 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 GSTT2P0CG29 244 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 YAP1P46937 504 aaKnown RBP9.02□□□□□ -0.96
NIPBL-202ENST00000448238 IER5Q5VY09 327 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 PTCHD4Q6ZW05 846 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 RASGRP2Q7LDG7 609 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 TRIM43Q96BQ3 446 aaPredicted RBP9.02□□□□□ -0.96
NIPBL-202ENST00000448238 WRNIP1Q96S55 665 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 TBC1D13Q9NVG8 400 aa9.02□□□□□ -0.96
NIPBL-202ENST00000448238 NARSO43776 548 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SNRNP200O75643 2136 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SERPINE1P05121 402 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 YES1P07947 543 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 RORAP35398 523 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 NME5P56597 212 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TAS2R41P59536 307 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CYP4F2P78329 520 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 EEF1A2Q05639 463 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CYP4F3Q08477 520 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PON3Q15166 354 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 FAM199XQ6PEV8 388 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TMEM192Q8IY95 271 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TSEN15Q8WW01 171 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TIMM8BQ9Y5J9 83 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PEX16Q9Y5Y5 336 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PRMT5O14744 637 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PRKD3O94806 890 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 LRG1P02750 347 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 NAB1Q13506 487 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SNAP47Q5SQN1 464 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SLC9B2Q86UD5 537 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SLCO6A1Q86UG4 719 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 MPP5Q8N3R9 675 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SLC44A3Q8N4M1 653 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 NUDT15Q9NV35 164 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 MTMR4Q9NYA4 1195 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF180Q9UJW8 692 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 EIF4G3O43432 1585 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ZSCAN5BA6NJL1 495 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 RNMTO43148 476 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF7P17097 686 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TIE1P35590 1138 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms