RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CIR1Q86X95 450 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TRAPPC5Q8IUR0 188 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 FBXO39Q8N4B4 442 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SMG8Q8ND04 991 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PLD4Q96BZ4 506 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ACTR8Q9H981 624 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PDLIM7Q9NR12 457 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 YIPF1Q9Y548 306 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 MYH11P35749 1972 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PDE4DIPQ5VU43 2346 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TRIM13O60858 407 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 RPSAP08865 295 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 LPOP22079 712 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 LRPAP1P30533 357 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CDH4P55283 916 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 AP2B1P63010 937 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PFKPQ01813 784 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 GALNTL6Q49A17 601 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 KIAA1324Q6UXG2 1013 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ZNF280BQ86YH2 543 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SUGP1Q8IWZ8 645 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SLC35F5Q8WV83 523 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 QKIQ96PU8 341 aaKnown RBP eCLIP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 NMRK1Q9NWW6 199 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CHKBQ9Y259 395 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 EIF3LQ9Y262 564 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 MYO1CO00159 1063 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 BTN3A1O00481 513 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TPP1O14773 563 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CCNT2O60583 730 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PIAS1O75925 651 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 NFATC1O95644 943 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TBX18O95935 607 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 IQCF3P0C7M6 154 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TSHRP16473 764 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ERFP50548 548 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 AQP5P55064 265 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 GNA12Q03113 381 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TAF11Q15544 211 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 POTEHQ6S545 545 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 AFTPHQ6ULP2 937 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 LAYNQ6UX15 382 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 LCA5Q86VQ0 697 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 IFNLR1Q8IU57 520 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 KCTD13Q8WZ19 329 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PRPF18Q99633 342 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 VPS45Q9NRW7 570 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ASB3Q9Y575 518 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ALOX15BO15296 676 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 IRAK2O43187 625 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ZNF623O75123 536 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 STAU1O95793 577 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 ABHD2P08910 425 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CCNCP24863 283 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CPA2P48052 419 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CCNG1P51959 295 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CA9Q16790 459 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 RARS2Q5T160 578 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 C16orf89Q6UX73 402 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CPNE8Q86YQ8 564 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SYTL1Q8IYJ3 562 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 CPA6Q8N4T0 437 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 NIPA2Q8N8Q9 360 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 RTL3Q8N8U3 475 aaKnown RBP7.5□□□□□ -1.21
SYNE1-213ENST00000448038 VPS37AQ8NEZ2 397 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 OR7D4Q8NG98 312 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 PCDH19Q8TAB3 1148 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 MCOLN3Q8TDD5 553 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 TMEM40Q8WWA1 233 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SERAC1Q96JX3 654 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 THTPAQ9BU02 230 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 MFSD1Q9H3U5 465 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 IL1RL2Q9HB29 575 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 RAD18Q9NS91 495 aa7.5□□□□□ -1.21
SYNE1-213ENST00000448038 SLCO1B7G3V0H7 640 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 SERPINE1P05121 402 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 CSF2RAP15509 400 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 SCNN1AP37088 669 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 MAGEA9P43362 315 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 LINGO4Q6UY18 593 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 OR8D1Q8WZ84 308 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 NSL1Q96IY1 281 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 XYLT2Q9H1B5 865 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 STOML1Q9UBI4 398 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 DNAJB4Q9UDY4 337 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 A0A1W2PRU2 124 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 H3BMM5 538 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 HOXA11P31270 313 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-213ENST00000448038 TTPAP49638 278 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 PLK1P53350 603 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 IL2P60568 153 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 CERCAMQ5T4B2 595 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 CACHD1Q5VU97 1274 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 FAM46CQ5VWP2 391 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 TMC5Q6UXY8 1006 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 SLC41A1Q8IVJ1 513 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 MREGQ8N565 214 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 LMO3Q8TAP4 145 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 HDAC10Q969S8 669 aa7.49□□□□□ -1.21
SYNE1-213ENST00000448038 HMCESQ96FZ2 354 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms