RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 IL21RQ9HBE5 538 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 EIF2B3Q9NR50 452 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 NKIRAS2Q9NYR9 191 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TRPC5Q9UL62 973 aaPredicted RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 SUFUQ9UMX1 484 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 SLC12A4Q9UP95 1085 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 CAMK2AQ9UQM7 478 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 NAALADL1Q9UQQ1 740 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 LRP12Q9Y561 859 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 CNTNAP2Q9UHC6 1331 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 ZFYVE9O95405 1425 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 TULP4Q9NRJ4 1543 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 PIK3C2BO00750 1634 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 SIGLEC1Q9BZZ2 1709 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 AP4M1O00189 453 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 TULP3O75386 442 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 HEXIM1O94992 359 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 TJP3O95049 919 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 F9P00740 461 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 FGBP02675 491 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 SLC3A2P08195 630 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 WEE2P0C1S8 567 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 CBSLP0DN79 551 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 ALADP13716 330 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 TNNT1P13805 278 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 CHN1P15882 459 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 MMP8P22894 467 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 HOXD9P28356 352 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 CBSP35520 551 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 RPL15P61313 204 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 TDGQ13569 410 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 KCNJ12Q14500 433 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 CYP1B1Q16678 543 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 AAK1Q2M2I8 961 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 CERKLQ49MI3 558 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 RNASE12Q5GAN4 147 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 FAM90A2PQ658T7 463 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 DENND1BQ6P3S1 775 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 PDXDC1Q6P996 788 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 TMCO3Q6UWJ1 677 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 H1FNTQ75WM6 255 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 CENPQQ7L2Z9 268 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 CAND1Q86VP6 1230 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 P3H2Q8IVL5 708 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 PTGR2Q8N8N7 351 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 ZCCHC10Q8TBK6 192 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 SOCS4Q8WXH5 440 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 FAR2Q96K12 515 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 PRAM1Q96QH2 718 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 EFHD1Q9BUP0 239 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 STN1Q9H668 368 aaKnown RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 VEZTQ9HBM0 779 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D14Q9P2M4 693 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 VPS28Q9UK41 221 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 GABRQQ9UN88 632 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 GDAQ9Y2T3 454 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 UBE2J1Q9Y385 318 aaPredicted RBP4.47□□□□□ -1.69
VPS29-202ENST00000447578 NSD2O96028 1365 aa4.47□□□□□ -1.69
VPS29-202ENST00000447578 RICTORQ6R327 1708 aa4.46□□□□□ -1.69
VPS29-202ENST00000447578 ZC3H13Q5T200 1668 aaKnown RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 IQSEC2Q5JU85 1478 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 A0A1W2PP64 1363 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 NINLQ9Y2I6 1382 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 CCDC187A0A096LP49 1063 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 GXYLT2A0PJZ3 443 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 MYMKA6NI61 221 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 MBD3L5A6NJ08 208 aaPredicted RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 AP3D1O14617 1153 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 TNPO2O14787 897 aaKnown RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 PLOD3O60568 738 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 PTP4A3O75365 173 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 UBL4AP11441 157 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 PEPDP12955 493 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 CCKARP32238 428 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 GRK5P34947 590 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 HOXD13P35453 343 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 ARL3P36405 182 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 PNPLA4P41247 253 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 FAM3BP58499 235 aaPredicted RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 E2F1Q01094 437 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 MAMLD1Q13495 774 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 ZNF268Q14587 947 aaPredicted RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 RBMS2Q15434 407 aaKnown RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 ST3GAL2Q16842 350 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 AASDHQ4L235 1098 aaPredicted RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 FAM133BQ5BKY9 247 aaKnown RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 RILPL1Q5EBL4 403 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 SLC22A25Q6T423 547 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 ENOSF1Q7L5Y1 443 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 WDR63Q8IWG1 891 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 LSMEM1Q8N8F7 131 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 C16orf52Q8NHV5 167 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 ARRDC3Q96B67 414 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 COQ8BQ96D53 544 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 FAM118BQ9BPY3 351 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 CDK19Q9BWU1 502 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 ADGRE3Q9BY15 652 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 USP44Q9H0E7 712 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 TRIM36Q9NQ86 728 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 RXFP3Q9NSD7 469 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms