RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SEC24CP53992 1094 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SLC7A9P82251 487 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 LRRC14Q15048 493 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PCSK7Q16549 785 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PLPP4Q5VZY2 271 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 NADSYN1Q6IA69 706 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 KIAA0930Q6ICG6 404 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 RFWD3Q6PCD5 774 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 LVRNQ6Q4G3 990 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ARHGAP36Q6ZRI8 547 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TMCO2Q7Z6W1 182 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 TMEM135Q86UB9 458 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 LRRC34Q8IZ02 419 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CARNMT1Q8N4J0 409 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CCDC63Q8NA47 563 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 VWCEQ96DN2 955 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 OXNAD1Q96HP4 312 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 MCOLN1Q9GZU1 580 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 VPS11Q9H270 941 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SCUBE2Q9NQ36 999 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 DCDC2Q9UHG0 476 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TLK1Q9UKI8 766 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 AGO1Q9UL18 857 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 TSPAN3O60637 253 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 APOA4P06727 396 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 GSTA1P08263 222 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TYK2P29597 1187 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 HOXA9P31269 272 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 AVPR1AP37288 418 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CCNFP41002 786 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CD86P42081 329 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 NIPAL4Q0D2K0 466 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ASPHQ12797 758 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ITIH4Q14624 930 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 INSCQ1MX18 579 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 RNF219Q5W0B1 726 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 KYAT3Q6YP21 454 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 PRPF39Q86UA1 669 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 LCA5Q86VQ0 697 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CPXM2Q8N436 756 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS50-205ENST00000441602 ARL14EPQ8N8R7 260 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 BANPQ8N9N5 519 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PPP2R3CQ969Q6 453 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TSPAN17Q96FV3 270 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SRPK1Q96SB4 655 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 SEMA3CQ99985 751 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CORO1BQ9BR76 489 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 C2orf49Q9BVC5 232 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 RABEP2Q9H5N1 569 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 NOL6Q9H6R4 1146 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 ARNT2Q9HBZ2 717 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 STOML2Q9UJZ1 356 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ANKRD6Q9Y2G4 727 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 A0A1W2PPM1 405 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SLC9A3R1O14745 358 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 PAPSS2O95340 614 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 CRTAMO95727 393 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 NDST3O95803 873 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PYGBP11216 843 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CDK18Q07002 472 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SLC12A1Q13621 1099 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PDK4Q16654 411 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 FAM133BQ5BKY9 247 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 CERCAMQ5T4B2 595 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 STXBP5Q5T5C0 1151 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 LILRA6Q6PI73 481 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 KDELC1Q6UW63 502 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 RGS9BPQ6ZS82 235 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 KIAA0408Q6ZU52 694 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 STRA8Q7Z7C7 330 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CIR1Q86X95 450 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 NDUFAF2Q8N183 169 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CFAP52Q8N1V2 620 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SLC25A41Q8N5S1 370 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 MRPL43Q8N983 215 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 TDRD5Q8NAT2 981 aaKnown RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 OR7D4Q8NG98 312 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 SPATA22Q8NHS9 363 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 RAB3IL1Q8TBN0 382 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ARNTL2Q8WYA1 636 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PEX13Q92968 403 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 PITPNM3Q9BZ71 974 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TASP1Q9H6P5 420 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 ZNF334Q9HCZ1 680 aaPredicted RBP6.11□□□□□ -1.43
VPS50-205ENST00000441602 GKN1Q9NS71 199 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 HACD3Q9P035 362 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 CFAP97Q9P2B7 532 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 KLHL14Q9P2G3 628 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TBC1D14Q9P2M4 693 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 VPS28Q9UK41 221 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 TBC1D30Q9Y2I9 924 aa6.11□□□□□ -1.43
VPS50-205ENST00000441602 E2F8A0AVK6 867 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 J3KR12 359 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 CBX4O00257 560 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 TYROBPO43914 113 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 OLFM2O95897 454 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 TPH1P17752 444 aa6.1□□□□□ -1.43
VPS50-205ENST00000441602 EN2P19622 333 aaPredicted RBP6.1□□□□□ -1.43
VPS50-205ENST00000441602 DNAJB1P25685 340 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms