RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MAXP61244 160 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 ARF5P84085 180 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 FCHO2Q0JRZ9 810 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 BBS9Q3SYG4 887 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 NAPEPLDQ6IQ20 393 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PARM1Q6UWI2 310 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 LINGO4Q6UY18 593 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 LINC00523Q86TU6 105 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 WFIKKN2Q8TEU8 576 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 TRMT61BQ9BVS5 477 aaKnown RBP17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PHACTR1Q9C0D0 580 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 ECT2Q9H8V3 914 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 EPS15L1Q9UBC2 864 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 OR51B4Q9Y5P0 310 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 AP3B1O00203 1094 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 RHOAP61586 193 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 TNK2Q07912 1038 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 SLC20A2Q08357 652 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 PDIA2Q13087 525 aaKnown RBP17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 MPP3Q13368 585 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 INO80DQ53TQ3 878 aaPredicted RBP17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 GRAMD4Q6IC98 578 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 MREGQ8N565 214 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 DNAAF3Q8N9W5 541 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 IPMKQ8NFU5 416 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 FGF14Q92915 247 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 ALG14Q96F25 216 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 SERPINB12Q96P63 405 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 PSKH2Q96QS6 385 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 RUFY1Q96T51 708 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 FAM83CQ9BQN1 747 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 BRD9Q9H8M2 597 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 SCUBE2Q9NQ36 999 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 UBP1Q9NZI7 540 aa17.39■□□□□ 0.38
CCDC28B-202ENST00000421922 GRXCR2A6NFK2 248 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 TP73O15350 636 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 ZMPSTE24O75844 475 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CES1P23141 567 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CD86P42081 329 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SERPINH1P50454 418 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 RUNX3Q13761 415 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CASP8Q14790 479 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 FUT11Q495W5 492 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PREPLQ4J6C6 727 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 TRMT10CQ7L0Y3 403 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 ZBED8Q8IZ13 594 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 ATP11CQ8NB49 1132 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CSGALNACT1Q8TDX6 532 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 HLA-CQ95604 372 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PWWP2AQ96N64 755 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 TTC25Q96NG3 672 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SEMA3CQ99985 751 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MGME1Q9BQP7 344 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PLA2G2FQ9BZM2 168 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 VPS45Q9NRW7 570 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 DEC1Q9P2X7 70 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SLC8A2Q9UPR5 921 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 NUMBLQ9Y6R0 609 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CXorf51AA0A1B0GTR3 108 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MBTPS2O43462 519 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PMPCBO75439 489 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CPP00450 1065 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SERPINF2P08697 491 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MLNP12872 115 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CA4P22748 312 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 NNMTP40261 264 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MAGEA4P43358 317 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 DSC2Q02487 901 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SPARCL1Q14515 664 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 PCSK7Q16549 785 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SPDYCQ5MJ68 293 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 CFAP58Q5T655 872 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 DENND2CQ68D51 928 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MBLAC2Q68D91 279 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 LRRC8BQ6P9F7 803 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 TSEN2Q8NCE0 465 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 SPATA22Q8NHS9 363 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 IMP4Q96G21 291 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 TBL1YQ9BQ87 522 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MLPHQ9BV36 600 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 FICDQ9BVA6 458 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 HPS4Q9NQG7 708 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 FAM50BQ9Y247 325 aa17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 FCF1Q9Y324 198 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-202ENST00000421922 MUC3AQ02505 3323 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 TULP3O75386 442 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 SUN1O94901 812 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 IGSF6O95976 241 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 MT-CYBP00156 380 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ATP5BP06576 529 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 SCNN1BP51168 640 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ECT2LQ008S8 904 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 KDSRQ06136 332 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 HTR4Q13639 388 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 CYTH1Q15438 398 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ITPRIPL2Q3MIP1 535 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ASTLQ6HA08 431 aaPredicted RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms