RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 POM121BA6NF01 834 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 MAGEC1O60732 1142 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 NEBLO76041 1014 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 LSM8O95777 96 aaKnown RBP11.8□□□□□ -0.52
USP4-204ENST00000416417 PAK4O96013 591 aaPredicted RBP11.8□□□□□ -0.52
USP4-204ENST00000416417 GIMD1P0DJR0 217 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 ADRB3P13945 408 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 EIF2S3P41091 472 aaKnown RBP11.8□□□□□ -0.52
USP4-204ENST00000416417 DAB2P98082 770 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 CARD16Q5EG05 197 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 LRRC73Q5JTD7 316 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 TPRG1LQ5T0D9 272 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 PTAR1Q7Z6K3 402 aaPredicted RBP11.8□□□□□ -0.52
USP4-204ENST00000416417 CCDC185Q8N715 623 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 PCDHB18PQ96TA0 734 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 HEPHQ9BQS7 1158 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 HDAC8Q9BY41 377 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 PAXBP1Q9Y5B6 917 aa11.8□□□□□ -0.52
USP4-204ENST00000416417 PIAS2O75928 621 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 C1SP09871 688 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 ITIH2P19823 946 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 ADRA1BP35368 520 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 NUDT1P36639 197 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 ABL2P42684 1182 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 CLCN6P51797 869 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 NEK3P51956 506 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 OVGP1Q12889 678 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 KRT31Q15323 416 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 TMEM259Q4ZIN3 620 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 ATXN7L2Q5T6C5 722 aaPredicted RBP11.79□□□□□ -0.52
USP4-204ENST00000416417 RETSATQ6NUM9 610 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 PYROXD2Q8N2H3 581 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 NXPE2Q96DL1 559 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 SLC17A9Q9BYT1 436 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 OSBPL2Q9H1P3 480 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 SCUBE2Q9NQ36 999 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 KLHL11Q9NVR0 708 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 DNAJC28Q9NX36 388 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 OR12D3Q9UGF7 316 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 DACH1Q9UI36 760 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 PCDHB1Q9Y5F3 818 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 RAI2Q9Y5P3 530 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 FADS3Q9Y5Q0 445 aa11.79□□□□□ -0.52
USP4-204ENST00000416417 BPTFQ12830 3046 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 A0A087WV48 116 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 IGLON5A6NGN9 336 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 CYP1A1P04798 512 aaPredicted RBP11.78□□□□□ -0.52
USP4-204ENST00000416417 ACP1P24666 158 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 L1CAMP32004 1257 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 CDR2Q01850 454 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 ZNF211Q13398 564 aaPredicted RBP11.78□□□□□ -0.52
USP4-204ENST00000416417 MANEALQ5VSG8 457 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 NEK5Q6P3R8 708 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 ABI3BPQ7Z7G0 1075 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 NLRP14Q86W24 1093 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 PCDH20Q8N6Y1 951 aaKnown RBP11.78□□□□□ -0.52
USP4-204ENST00000416417 MSANTD4Q8NCY6 345 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 OR4C6Q8NH72 309 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 ARHGEF2Q92974 986 aaKnown RBP11.78□□□□□ -0.52
USP4-204ENST00000416417 PPP1R16AQ96I34 528 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 KLC2Q9H0B6 622 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 KLF15Q9UIH9 416 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 NEU3Q9UQ49 428 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 CLCA2Q9UQC9 943 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 IGSF10Q6WRI0 2623 aa11.78□□□□□ -0.52
USP4-204ENST00000416417 LY6G6EA0A0G2JKS1 128 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 C2CD4BA6NLJ0 364 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 A6NNZ2 444 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 KRIT1O00522 736 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 CASC3O15234 703 aaKnown RBP11.77□□□□□ -0.52
USP4-204ENST00000416417 SPINT1O43278 529 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 BRINP1O60477 761 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 LRIG2O94898 1065 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 MT-CO3P00414 261 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 PRB1P04280 392 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 MMP8P22894 467 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ITGB7P26010 798 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 EEF1GP26641 437 aaKnown RBP11.77□□□□□ -0.52
USP4-204ENST00000416417 SDC4P31431 198 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 SOX5P35711 763 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ABCG1P45844 678 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 HDAC4P56524 1084 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 JAM2P57087 298 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 PTP4A2Q12974 167 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 FZD2Q14332 565 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ACAP1Q15027 740 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 CDKAL1Q5VV42 579 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ZNF783Q6ZMS7 281 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ZNF354CQ86Y25 554 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 FAM172AQ8WUF8 416 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 VOPP1Q96AW1 172 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 NAF1Q96HR8 494 aaKnown RBP11.77□□□□□ -0.52
USP4-204ENST00000416417 FEM1CQ96JP0 617 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 APOLD1Q96LR9 279 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 CEP44Q9C0F1 390 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 TCEAL2Q9H3H9 227 aaPredicted RBP11.77□□□□□ -0.52
USP4-204ENST00000416417 FANCLQ9NW38 375 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 PPARGC1AQ9UBK2 798 aaKnown RBP11.77□□□□□ -0.52
USP4-204ENST00000416417 U3KQA8 63 aa11.77□□□□□ -0.52
USP4-204ENST00000416417 ATRXP46100 2492 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms