RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TET1Q8NFU7 2136 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 MICAL3Q7RTP6 2002 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 ARHGEF35A5YM69 484 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 PODXLO00592 558 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 TRIM38O00635 465 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 EDIL3O43854 480 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ERLIN2O94905 339 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 LYPLA2O95372 231 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 LMNAP02545 664 aaKnown RBP6.84□□□□□ -1.32
USP40-202ENST00000409945 CFIP05156 583 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 CCT6AP40227 531 aaKnown RBP6.84□□□□□ -1.32
USP40-202ENST00000409945 PRPHP41219 470 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 GPC3P51654 580 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 TAP1Q03518 808 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ST3GAL1Q11201 340 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 GPNMBQ14956 572 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 KRT72Q14CN4 511 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 EMC2Q15006 297 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 CYP2A13Q16696 494 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 PFKFB4Q16877 469 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 C4orf46Q504U0 113 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 KIAA0408Q6ZU52 694 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ANO5Q75V66 913 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 CATSPER4Q7RTX7 472 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ADGRG5Q8IZF4 528 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 RASSF8Q8NHQ8 419 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 TMEM171Q8WVE6 324 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 EDAQ92838 391 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 EXTL1Q92935 676 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 TMEM125Q96AQ2 219 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 LOXL4Q96JB6 756 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ZC3H10Q96K80 434 aaKnown RBP6.84□□□□□ -1.32
USP40-202ENST00000409945 NLRP4Q96MN2 994 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 MTMR9Q96QG7 549 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 POLR3CQ9BUI4 534 aaPredicted RBP6.84□□□□□ -1.32
USP40-202ENST00000409945 NT5C3AQ9H0P0 336 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 RGL1Q9NZL6 768 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 CHMP5Q9NZZ3 219 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 LUZP4Q9P127 313 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 CEP72Q9P209 647 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 SSX2IPQ9Y2D8 614 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 EVPLQ92817 2033 aa6.84□□□□□ -1.32
USP40-202ENST00000409945 ADGRA3Q8IWK6 1321 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 GOLGA6L6A8MZA4 724 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 AGPSO00116 658 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 THAP12O43422 761 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 LPXNO60711 386 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 SLITRK3O94933 977 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 RB1P06400 928 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 DARSP14868 501 aaKnown RBP6.83□□□□□ -1.32
USP40-202ENST00000409945 MYOGP15173 224 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 ACVR2AP27037 513 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 RPA1P27694 616 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 PXNP49023 591 aaPredicted RBP6.83□□□□□ -1.32
USP40-202ENST00000409945 CXADRP78310 365 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 MYO1EQ12965 1108 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 CDSNQ15517 529 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 AAK1Q2M2I8 961 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 PLA2G4FQ68DD2 849 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 PLAG1Q6DJT9 500 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 CNPY4Q8N129 248 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 STYXQ8WUJ0 223 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 MUL1Q969V5 352 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 ZBTB10Q96DT7 871 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 IFT74Q96LB3 600 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 HSD17B14Q9BPX1 270 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 ELAC1Q9H777 363 aaKnown RBP6.83□□□□□ -1.32
USP40-202ENST00000409945 ERVK-5Q9HDB9 667 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 RGS18Q9NS28 235 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 MTUS1Q9ULD2 1270 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 RAD54BQ9Y620 910 aa6.83□□□□□ -1.32
USP40-202ENST00000409945 SZT2Q5T011 3432 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 GBF1Q92538 1859 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 IGKV6-21A0A0C4DH24 114 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CCDC189A1A4V9 331 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 LINC01553A4QN01 128 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 UNC119BA6NIH7 251 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 NPC1O15118 1278 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 TYRP1P17643 537 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 NTSR1P30989 418 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CTNNB1P35222 781 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CUL4AQ13619 759 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 RABL3Q5HYI8 236 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 ARL6IP4Q66PJ3 421 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 TWF2Q6IBS0 349 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 FAM228AQ86W67 206 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 ZBTB8OSQ8IWT0 167 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 TMEM132CQ8N3T6 1108 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CNNM3Q8NE01 707 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 BPIFB1Q8TDL5 484 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 PRPF31Q8WWY3 499 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 PPM1EQ8WY54 764 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CALML4Q96GE6 196 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 AK8Q96MA6 479 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 MRPL9Q9BYD2 267 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 C2orf40Q9H1Z8 148 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 DHX33Q9H6R0 707 aaKnown RBP6.82□□□□□ -1.32
USP40-202ENST00000409945 TMEM161AQ9NX61 479 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 DKK4Q9UBT3 224 aa6.82□□□□□ -1.32
USP40-202ENST00000409945 CLCA2Q9UQC9 943 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms