RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TDP1Q9NUW8 608 aa14.29□□□□□ -0.12
GPNMB-203ENST00000409458 UBA2Q9UBT2 640 aaPredicted RBP14.29□□□□□ -0.12
GPNMB-203ENST00000409458 TBK1Q9UHD2 729 aa14.29□□□□□ -0.12
GPNMB-203ENST00000409458 MRPS23Q9Y3D9 190 aaKnown RBP14.29□□□□□ -0.12
GPNMB-203ENST00000409458 FOXO6A8MYZ6 492 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 CBX4O00257 560 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 ZNF197O14709 1029 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 SNAP91O60641 907 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 PAPLNO95428 1278 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 GSTA2P09210 222 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 PGAM1P18669 254 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 GEMIN4P57678 1058 aaKnown RBP14.28□□□□□ -0.12
GPNMB-203ENST00000409458 CDH17Q12864 832 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 MPP3Q13368 585 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 PCSK7Q16549 785 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 KBTBD12Q3ZCT8 623 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 MPPE1Q53F39 396 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 CERCAMQ5T4B2 595 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 TRMT10BQ6PF06 316 aaKnown RBP14.28□□□□□ -0.12
GPNMB-203ENST00000409458 LINC00523Q86TU6 105 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 RIBC1Q8N443 379 aaPredicted RBP14.28□□□□□ -0.12
GPNMB-203ENST00000409458 ARRDC2Q8TBH0 407 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 PAFAH2Q99487 392 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 DHRS4Q9BTZ2 278 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 PLK2Q9NYY3 685 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 FETUBQ9UGM5 382 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 SLC24A2Q9UI40 661 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 ADAM21Q9UKJ8 722 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 CLEC4EQ9ULY5 219 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 OR51B4Q9Y5P0 310 aa14.28□□□□□ -0.12
GPNMB-203ENST00000409458 TPH1P17752 444 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 ATP1A2P50993 1020 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 WNT3AP56704 352 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 SKOR1P84550 965 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 CBX2Q14781 532 aaPredicted RBP14.27□□□□□ -0.12
GPNMB-203ENST00000409458 FYB2Q5VWT5 728 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 RNF43Q68DV7 783 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 DENND5AQ6IQ26 1287 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 KDM7AQ6ZMT4 941 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 TADA1Q96BN2 335 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 ALG14Q96F25 216 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 CYTH2Q99418 400 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 CDCA3Q99618 268 aaPredicted RBP14.27□□□□□ -0.12
GPNMB-203ENST00000409458 MGME1Q9BQP7 344 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 FEM1AQ9BSK4 669 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 FSD1LQ9BXM9 530 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 POLR1EQ9GZS1 481 aaKnown RBP14.27□□□□□ -0.12
GPNMB-203ENST00000409458 STMN4Q9H169 189 aaPredicted RBP14.27□□□□□ -0.12
GPNMB-203ENST00000409458 IGFLR1Q9H665 355 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 PPCSQ9HAB8 311 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 SMYD2Q9NRG4 433 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 BFARQ9NZS9 450 aa14.27□□□□□ -0.12
GPNMB-203ENST00000409458 PSMC3IPQ9P2W1 217 aaPredicted RBP14.27□□□□□ -0.12
GPNMB-203ENST00000409458 CXorf49A8MYA2 514 aaPredicted RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ATP9BO43861 1147 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ZMPSTE24O75844 475 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CD160O95971 181 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 PRKCHP24723 683 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CRYMQ14894 314 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 MPP7Q5T2T1 576 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ALG1LQ6GMV1 187 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CES3Q6UWW8 571 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 LINGO4Q6UY18 593 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 KDELC2Q7Z4H8 507 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 EXOC3L1Q86VI1 746 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 DCAKDQ8WVC6 231 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 TIFAQ96CG3 184 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 MRPL38Q96DV4 380 aaKnown RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 SEMA3CQ99985 751 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CINPQ9BW66 212 aaPredicted RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 VPS45Q9NRW7 570 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 SAMD15Q9P1V8 674 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 SEPT3Q9UH03 358 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 VPS28Q9UK41 221 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 GLP2RO95838 553 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 TCF3P15923 654 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ATP5DP30049 168 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CHRNA4P43681 627 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 RGRP47804 291 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 NPY2RP49146 381 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 PPP2R2AP63151 447 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 PPARDQ03181 441 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 LMAN2Q12907 356 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 RFTN1Q14699 578 aaPredicted RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CYTH1Q15438 398 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 RARS2Q5T160 578 aaKnown RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 CCNJLQ8IV13 435 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ARID3BQ8IVW6 561 aaPredicted RBP14.26□□□□□ -0.13
GPNMB-203ENST00000409458 UNC5BQ8IZJ1 945 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 TDHQ8IZJ6 230 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 APCDD1Q8J025 514 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 BBS5Q8N3I7 341 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 DCAF4L2Q8NA75 395 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 EXOC2Q96KP1 924 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 NAT9Q9BTE0 207 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 APOL5Q9BWW9 433 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 IL22Q9GZX6 179 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 DZANK1Q9NVP4 752 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 VPS51Q9UID3 782 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 ZMYM5Q9UJ78 669 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms