RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CYP2R1Q6VVX0 501 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 DNAJC9Q8WXX5 260 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 SLC12A4Q9UP95 1085 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 RIPK2O43353 540 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 RARAP10276 462 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 TMEM161BQ8NDZ6 487 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 PROX1Q92786 737 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 VCPIP1Q96JH7 1222 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 PRRG3Q9BZD7 231 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 REXO4Q9GZR2 422 aaKnown RBP11.48□□□□□ -0.57
TTC28-201ENST00000397906 TAGLN3Q9UI15 199 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 ATP13A4Q4VNC1 1196 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 PSTKQ8IV42 348 aaKnown RBP11.48□□□□□ -0.57
TTC28-201ENST00000397906 WDR36Q8NI36 951 aaKnown RBP11.48□□□□□ -0.57
TTC28-201ENST00000397906 CLIC5Q9NZA1 410 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 ANKRD6Q9Y2G4 727 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 RGS1Q08116 209 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 ANKRD52Q8NB46 1076 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.48□□□□□ -0.578e-6■□□□□ 10.8
TTC28-201ENST00000397906 DDX20Q9UHI6 824 aaKnown RBP11.48□□□□□ -0.57
TTC28-201ENST00000397906 TK2O00142 265 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 FFAR2O15552 330 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 EPHX1P07099 455 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 IRF8Q02556 426 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 FAM25AB3EWG3 89 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 FAM25CB3EWG5 89 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 FAM25GB3EWG6 89 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 RASGRP1O95267 797 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 HIST1H2ABP04908 130 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 CLCNKBP51801 687 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 HIST3H2AQ7L7L0 130 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 FAM20CQ8IXL6 584 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 HIST1H2ACQ93077 130 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 RNF145Q96MT1 663 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 KLHL5Q96PQ7 755 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 LGMNQ99538 433 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 ADAM28Q9UKQ2 775 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 INVSQ9Y283 1065 aa11.48□□□□□ -0.57
TTC28-201ENST00000397906 EEF1DP3Q658K8 133 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 ZC3H7AQ8IWR0 971 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 ATAD1Q8NBU5 361 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 TCP10LQ8TDR4 215 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 MTMR9Q96QG7 549 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PALMDQ9NP74 551 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 APOC4-APOC2K7ER74 178 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 DNALI1O14645 258 aaPredicted RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 APOC2P02655 101 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 ATP12AP54707 1039 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 MIIPQ5JXC2 388 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 CCDC189A1A4V9 331 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 TMEM191CA6NGB0 347 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 ALAS2P22557 587 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PCID2Q5JVF3 399 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 DDX3XO00571 662 aaKnown RBP eCLIP11.47□□□□□ -0.57
TTC28-201ENST00000397906 UQCRBP14927 111 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 CORO1AP31146 461 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 ZNF143P52747 638 aaPredicted RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 CDKAL1Q5VV42 579 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 BTN2A1Q7KYR7 527 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 FAM35AQ86V20 835 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 FAM20BO75063 409 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 ATAT1Q5SQI0 421 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 NEK10Q6ZWH5 1172 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 APBB2Q92870 758 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 DUS2Q9NX74 493 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 GMIPQ9P107 970 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 STK39Q9UEW8 545 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 COPG1Q9Y678 874 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 SIGLEC16A6NMB1 481 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 H0YC42 278 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 S100A3P33764 101 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 KLC1Q07866 573 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 TBX2Q13207 712 aaPredicted RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 UXS1Q8NBZ7 420 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 RNASE11Q8TAA1 199 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 WRAP53Q9BUR4 548 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 TMBIM4Q9HC24 238 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 RIPK3Q9Y572 518 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 SMIM35A0A1B0GVV1 85 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 GUCY1B2O75343 617 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PAGE1O75459 146 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 POLD2P49005 469 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 FAM98BQ52LJ0 330 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 ZNF544Q6NX49 715 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 CCDC103Q8IW40 242 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 ADPRHL2Q9NX46 363 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 EPN2O95208 641 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 FGRP09769 529 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PAICSP22234 425 aaKnown RBP11.47□□□□□ -0.57
TTC28-201ENST00000397906 FAAP100Q0VG06 881 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PARP6Q2NL67 630 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 FAM129CQ86XR2 697 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 POU5F2Q8N7G0 328 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 SLCO1B7G3V0H7 640 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 STXBP5Q5T5C0 1151 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PRR23BQ6ZRT6 265 aa11.47□□□□□ -0.57
TTC28-201ENST00000397906 PIAS1O75925 651 aa11.46□□□□□ -0.57
TTC28-201ENST00000397906 LRATO95237 230 aa11.46□□□□□ -0.57
TTC28-201ENST00000397906 PSMC3P17980 439 aa11.46□□□□□ -0.57
TTC28-201ENST00000397906 MRPS5P82675 430 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms