RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 HPS6Q86YV9 775 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 DDX43Q9NXZ2 648 aaKnown RBP14.13□□□□□ -0.15
COL4A3-202ENST00000396578 VPS4AQ9UN37 437 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 PGRMC2O15173 223 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 SLC25A12O75746 678 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 FARP2O94887 1054 aaPredicted RBP14.13□□□□□ -0.15
COL4A3-202ENST00000396578 TNFRSF8P28908 595 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 OLR1P78380 273 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 FOLH1Q04609 750 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 GPAT3Q53EU6 434 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF280DQ6N043 979 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 USP45Q70EL2 814 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 MEIOBQ8N635 442 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF655Q8N720 491 aaPredicted RBP14.13□□□□□ -0.15
COL4A3-202ENST00000396578 PIK3C3Q8NEB9 887 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 HASPINQ8TF76 798 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 SEMA4BQ9NPR2 832 aaPredicted RBP14.13□□□□□ -0.15
COL4A3-202ENST00000396578 SLC35C2Q9NQQ7 365 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 VIL1P09327 827 aaKnown RBP14.13□□□□□ -0.15
COL4A3-202ENST00000396578 COX4I1P13073 169 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 BMP7P18075 431 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 ADRA1DP25100 572 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 RNF19BQ6ZMZ0 732 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 SAMD3Q8N6K7 520 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 TEX47Q8TBZ9 253 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 MTMR8Q96EF0 704 aa14.13□□□□□ -0.15
COL4A3-202ENST00000396578 RARAP10276 462 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF398Q8TD17 642 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 BORCS5Q969J3 196 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PRR36Q9H6K5 1346 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ABCC3O15438 1527 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 CHP2O43745 196 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SLC26A2P50443 739 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PTGES3Q15185 160 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ANGEL2Q5VTE6 544 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF554Q86TJ5 538 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 DNAJB14Q8TBM8 379 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 VAT1Q99536 393 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 TBC1D10AQ9BXI6 508 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 KLQ9UEF7 1012 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 GGA2Q9UJY4 613 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 FAM50BQ9Y247 325 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 IRGMA1A4Y4 181 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PGK1P00558 417 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 CLCN3P51790 818 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 LAMTOR4Q0VGL1 99 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 RRP1BQ14684 758 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 MED22Q15528 200 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 GCLCP48506 637 aaPredicted RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SPIBQ01892 262 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ZFP69Q49AA0 526 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PAN2Q504Q3 1202 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SLC41A1Q8IVJ1 513 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 DGCR14Q96DF8 476 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SERPINB11Q96P15 392 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 GPN1Q9HCN4 374 aaPredicted RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 NDOR1Q9UHB4 597 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 CORO1CQ9ULV4 474 aaPredicted RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 HPSEQ9Y251 543 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 MYO3AQ8NEV4 1616 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SCGNO76038 276 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SERPINA1P01009 418 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 MMP13P45452 471 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 NDST1P52848 882 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 RIPK1Q13546 671 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 NFIXQ14938 502 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 INSCQ1MX18 579 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 FNBP1LQ5T0N5 605 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 FAM171BQ6P995 826 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PACS1Q6VY07 963 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 EIF1ADQ8N9N8 165 aaKnown RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 YME1L1Q96TA2 773 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 C8orf4Q9NR00 106 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 PPP2R3BQ9Y5P8 575 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 APOC4-APOC2K7ER74 178 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 RTN3O95197 1032 aaPredicted RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 APOC2P02655 101 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 TLX1P31314 330 aaPredicted RBP14.12□□□□□ -0.15
COL4A3-202ENST00000396578 MYBPC1Q00872 1141 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 DPYSL3Q14195 570 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 RETSATQ6NUM9 610 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 ALG9Q9H6U8 611 aa14.12□□□□□ -0.15
COL4A3-202ENST00000396578 SH3BGRLO75368 114 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ADSLP30566 484 aaPredicted RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 PPIL2Q13356 520 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 RFX4Q33E94 735 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 KCNT2Q6UVM3 1135 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 BTBD9Q96Q07 612 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CLCC1Q96S66 551 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 TMEM39BQ9GZU3 492 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 PRDM16Q9HAZ2 1276 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 MYOZ2Q9NPC6 264 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CASTOR2A6NHX0 329 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CDC40O60508 579 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SERPINA6P08185 405 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 LTA4HP09960 611 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ACAT1P24752 427 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF135P52742 658 aaPredicted RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 BCL2L1Q07817 233 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ZNF606Q8WXB4 792 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms