RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TCAF1Q9Y4C2 921 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 TPP1O14773 563 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 ACVRL1P37023 503 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 LIMK2P53671 638 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 LACTB2Q53H82 288 aaPredicted RBP25.56■■□□□ 1.68
SHOX2-201ENST00000389589 KYAT3Q6YP21 454 aaKnown RBP25.56■■□□□ 1.68
SHOX2-201ENST00000389589 CCDC63Q8NA47 563 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 RNF38Q9H0F5 515 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 ATP13A1Q9HD20 1204 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 DCDC2Q9UHG0 476 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 KLF11O14901 512 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 TEX28O15482 410 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 LILRB3O75022 631 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 GLRA3O75311 464 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 NEFHP12036 1026 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 CD86P42081 329 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 GNA12Q03113 381 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 ADGRF1Q5T601 910 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 CHST9Q7L1S5 443 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 OTOP2Q7RTS6 562 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 ISL2Q96A47 359 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 AGAP2Q99490 1192 aa25.55■■□□□ 1.68
SHOX2-201ENST00000389589 ACTR5Q9H9F9 607 aaPredicted RBP25.55■■□□□ 1.68
SHOX2-201ENST00000389589 TIMM44O43615 452 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 KLKB1P03952 638 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 PABPC1LQ4VXU2 614 aaKnown RBP25.54■■□□□ 1.68
SHOX2-201ENST00000389589 FYB2Q5VWT5 728 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 RNF43Q68DV7 783 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 TADA1Q96BN2 335 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 POLR1EQ9GZS1 481 aaKnown RBP25.54■■□□□ 1.68
SHOX2-201ENST00000389589 ZBP1Q9H171 429 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 GKN1Q9NS71 199 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 IARS2Q9NSE4 1012 aaKnown RBP25.54■■□□□ 1.68
SHOX2-201ENST00000389589 ASB3Q9Y575 518 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 DENND4CQ5VZ89 1909 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 C2orf78A6NCI8 922 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 FGF18O76093 207 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 LATS1O95835 1130 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 MMP2P08253 660 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 PAMP19021 973 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 SERPINB8P50452 374 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 MAXP61244 160 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 DSC2Q02487 901 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 PCSK7Q16549 785 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 INSCQ1MX18 579 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 OTOAQ7RTW8 1153 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 HERC6Q8IVU3 1022 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 BBS5Q8N3I7 341 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 PDFQ9HBH1 243 aa25.54■■□□□ 1.68
SHOX2-201ENST00000389589 AGO1Q9UL18 857 aaKnown RBP25.54■■□□□ 1.68
SHOX2-201ENST00000389589 H3BNC9 293 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 BIRC5O15392 142 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 CTSAP10619 480 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 TYK2P29597 1187 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 HADHAP40939 763 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 PDE1CQ14123 709 aaPredicted RBP25.53■■□□□ 1.68
SHOX2-201ENST00000389589 ZNF235Q14590 738 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 SMAD1Q15797 465 aaKnown RBP25.53■■□□□ 1.68
SHOX2-201ENST00000389589 DBN1Q16643 649 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 FIBCD1Q8N539 461 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 ARMC2Q8NEN0 867 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 ARRDC2Q8TBH0 407 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 PRICKLE1Q96MT3 831 aaPredicted RBP25.53■■□□□ 1.68
SHOX2-201ENST00000389589 ZNF778Q96MU6 729 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 RANBP9Q96S59 729 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 TMEM106CQ9BVX2 250 aa25.53■■□□□ 1.68
SHOX2-201ENST00000389589 ALG13Q9NP73 1137 aaKnown RBP25.53■■□□□ 1.68
SHOX2-201ENST00000389589 IL1BP01584 269 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 MAGEA12P43365 314 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 PGBD5Q8N414 524 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 RAB3IL1Q8TBN0 382 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 STOML2Q9UJZ1 356 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 A0A1B0GVM2 712 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ILVBLA1L0T0 632 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 HEATR9A2RTY3 570 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 TCAF2A6NFQ2 919 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 F11P03951 625 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 MBL2P11226 248 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ETFBP38117 255 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 SERPINH1P50454 418 aaKnown RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 RPS24P62847 133 aaKnown RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 HTRA4P83105 476 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ZNF177Q13360 481 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 UGP2Q16851 508 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 FSTL4Q6MZW2 842 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 TMEM150AQ86TG1 271 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 SETD3Q86TU7 594 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 CNTN4Q8IWV2 1026 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 DCLK2Q8N568 766 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 GBP7Q8N8V2 638 aaPredicted RBP25.52■■□□□ 1.68
SHOX2-201ENST00000389589 PTPRN2Q92932 1015 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 MCMBPQ9BTE3 642 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 TSSK1BQ9BXA7 367 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ATXN3LQ9H3M9 355 aa25.52■■□□□ 1.68
SHOX2-201ENST00000389589 ZBBXA8MT70 800 aa25.51■■□□□ 1.67
SHOX2-201ENST00000389589 TROVE2P10155 538 aaKnown RBP eCLIP25.51■■□□□ 1.67
SHOX2-201ENST00000389589 IRF1P10914 325 aa25.51■■□□□ 1.67
SHOX2-201ENST00000389589 HSPA8P11142 646 aaKnown RBP25.51■■□□□ 1.67
SHOX2-201ENST00000389589 KDELC2Q7Z4H8 507 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms