RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 HDAC8Q9BY41 377 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 DHX35Q9H5Z1 703 aaKnown RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 FNDC3AQ9Y2H6 1198 aaKnown RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 SNX11Q9Y5W9 270 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 DOCK9Q9BZ29 2069 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 EEF2KO00418 725 aaKnown RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 VILLO15195 856 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 BUB1O43683 1085 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 CD160O95971 181 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 GSRP00390 522 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ITGB7P26010 798 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 CD38P28907 300 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 PMLP29590 882 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 CASP14P31944 242 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ZNF135P52742 658 aaPredicted RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 SNRPD1P62314 119 aaKnown RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ACAP1Q15027 740 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 SETMARQ53H47 684 aaPredicted RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 NAPEPLDQ6IQ20 393 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 NEK5Q6P3R8 708 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 LAYNQ6UX15 382 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ERN2Q76MJ5 926 aaKnown RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 PSTKQ8IV42 348 aaKnown RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 UMODL1-AS1Q8N2C9 162 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ARRDC3Q96B67 414 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 PEBP4Q96S96 227 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 TM6SF2Q9BZW4 377 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 TRIM7Q9C029 511 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 NOL6Q9H6R4 1146 aaKnown RBP17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ZDHHC6Q9H6R6 413 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 EBF2Q9HAK2 575 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 IL21RQ9HBE5 538 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 TM7SF3Q9NS93 570 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 GPATCH2LQ9NWQ4 482 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 PCSK1NQ9UHG2 260 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 ANGPTL2Q9UKU9 493 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 DMTF1Q9Y222 760 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 PCDHGB2Q9Y5G2 931 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 WASF2Q9Y6W5 498 aa17.13■□□□□ 0.33
HMGN4-201ENST00000377575 RASA4BC9J798 803 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 RASA4O43374 803 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 DFNA5O60443 496 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 LRCH4O75427 683 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 MIPP30301 263 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 MAT2AP31153 395 aaKnown RBP17.12■□□□□ 0.33
HMGN4-201ENST00000377575 CTSKP43235 329 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 CCT8P50990 548 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 NEK3P51956 506 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 NFKBIBQ15653 356 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 SPECC1LQ69YQ0 1117 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 RYBPQ8N488 228 aaPredicted RBP17.12■□□□□ 0.33
HMGN4-201ENST00000377575 OR2AP1Q8NGE2 309 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 HMCESQ96FZ2 354 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 LRIG1Q96JA1 1093 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 PCDHB9Q9Y5E1 797 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 ACTL7AQ9Y615 435 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 KNL1Q8NG31 2342 aa17.12■□□□□ 0.33
HMGN4-201ENST00000377575 TRPM6Q9BX84 2022 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 FLRT2O43155 660 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 DAPK3O43293 454 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 SH3BP5O60239 455 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 TMCC1O94876 653 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 TPM1P09493 284 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 PCK1P35558 622 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 NDST2P52849 883 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 TAS2R38P59533 333 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 SIM1P81133 766 aaPredicted RBP17.11■□□□□ 0.33
HMGN4-201ENST00000377575 SERINC3Q13530 473 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 PIGHQ14442 188 aaPredicted RBP17.11■□□□□ 0.33
HMGN4-201ENST00000377575 SUZ12Q15022 739 aaKnown RBP17.11■□□□□ 0.33
HMGN4-201ENST00000377575 ZNF423Q2M1K9 1284 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 RFX8Q6ZV50 586 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 ARFGAP1Q8N6T3 406 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 GDAP1L1Q96MZ0 367 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 KCTD15Q96SI1 283 aaPredicted RBP17.11■□□□□ 0.33
HMGN4-201ENST00000377575 OSBPL1AQ9BXW6 950 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 THAP2Q9H0W7 228 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 ZWILCHQ9H900 591 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 ARHGAP20Q9P2F6 1191 aa17.11■□□□□ 0.33
HMGN4-201ENST00000377575 A0A087X0T9 212 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 MAGEC1O60732 1142 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 RNGTTO60942 597 aaKnown RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 IGSF6O95976 241 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 FAM228BP0C875 321 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 ADRB3P13945 408 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 HNRNPH3P31942 346 aaKnown RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 SHC2P98077 582 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 RAD51Q06609 339 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 CA9Q16790 459 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 INAVAQ3KP66 663 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 INO80DQ53TQ3 878 aaPredicted RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 PPP6R3Q5H9R7 873 aaPredicted RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 ALKBH5Q6P6C2 394 aaKnown RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 FBXL19Q6PCT2 694 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 LEKR1Q6ZMV7 388 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 CYP4V2Q6ZWL3 525 aaPredicted RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 HORMAD1Q86X24 394 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 SETD7Q8WTS6 366 aaKnown RBP17.1■□□□□ 0.33
HMGN4-201ENST00000377575 NUP85Q9BW27 656 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 LRRC19Q9H756 370 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms