RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PAQR9Q6ZVX9 377 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 LDB1Q86U70 411 aaPredicted RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ANKRD13AQ8IZ07 590 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 HIC2Q96JB3 615 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 MROH8Q9H579 483 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 TRPC7Q9HCX4 862 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 COPG1Q9Y678 874 aaKnown RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 TRIP12Q14669 1992 aaPredicted RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 PIRO00625 290 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 CD4P01730 458 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 FYNP06241 537 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 GABRB3P28472 473 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 NAB1Q13506 487 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PRPSAP1Q14558 356 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ZC3HC1Q86WB0 502 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 IFNLR1Q8IU57 520 aaPredicted RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 B4GALNT2Q8NHY0 566 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ZFAND2BQ8WV99 257 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 KLHL32Q96NJ5 620 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 SLC39A3Q9BRY0 314 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 POMKQ9H5K3 350 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 EFCAB1Q9HAE3 211 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 TMEM30AQ9NV96 361 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 FAM95CA0A1B0GW59 222 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 GPC4O75487 556 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ALOX15P16050 662 aaPredicted RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 RPS6KA3P51812 740 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 CACNB2Q08289 660 aaPredicted RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 DYNC1I2Q13409 638 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PAFAH1B3Q15102 231 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PPP1R3AQ16821 1122 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 GEN1Q17RS7 908 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 SV2CQ496J9 727 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 NADK2Q4G0N4 442 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 AGKQ53H12 422 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 IL23RQ5VWK5 629 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF470Q6ECI4 717 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 LRRC8EQ6NSJ5 796 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 MAMDC4Q6UXC1 1216 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 DRC3Q9H069 523 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 Q9H521 79 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 CASS4Q9NQ75 786 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 GMPR2Q9P2T1 348 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ADAM28Q9UKQ2 775 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 SNX13Q9Y5W8 968 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 MMP3P08254 477 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 SBK3P0C264 359 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 SLC35E2BP0CK96 405 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PRAMEP78395 509 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 CDH17Q12864 832 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PRKAA1Q13131 559 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 MAP7Q14244 749 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 R3HDM1Q15032 1099 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 DBN1Q16643 649 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ARL13BQ3SXY8 428 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 DIS3LQ8TF46 1054 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 PDCD6IPQ8WUM4 868 aaKnown RBP12.3□□□□□ -0.44
CLIP3-201ENST00000360535 LPPQ93052 612 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 GBA3Q9H227 469 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 ADAMTS10Q9H324 1103 aa12.3□□□□□ -0.44
CLIP3-201ENST00000360535 TTC24A2A3L6 582 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF487B1APH4 448 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 TMEM114B3SHH9 223 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 TREHO43280 583 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 TPST1O60507 370 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 PGK1P00558 417 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 STMN1P16949 149 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SLC12A1Q13621 1099 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF423Q2M1K9 1284 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 OGFRL1Q5TC84 451 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ITPRIPL1Q6GPH6 555 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZYG11AQ6WRX3 759 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CENPLQ8N0S6 344 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CNTD1Q8N815 330 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 OR9I1Q8NGQ6 314 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CEP70Q8NHQ1 597 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 RP9Q8TA86 221 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 COLEC11Q9BWP8 271 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 FSD1LQ9BXM9 530 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 MRPL1Q9BYD6 325 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 IL22Q9GZX6 179 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZDHHC7Q9NXF8 308 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 PPP2R3BQ9Y5P8 575 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CASTOR2A6NHX0 329 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 RNASEH2AO75792 299 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SNAI1O95863 264 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 RPL10P27635 214 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 TAS2R39P59534 338 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SNAPC2Q13487 334 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ADGRE1Q14246 886 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 LRRC23Q53EV4 343 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ARHGAP22Q7Z5H3 698 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF410Q86VK4 478 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 GPC2Q8N158 579 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 GPRC5AQ8NFJ5 357 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 PCED1BQ96HM7 432 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 HNRNPABQ99729 332 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CAAP1Q9H8G2 361 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CRTAC1Q9NQ79 661 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms