RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 WASH4PA8MWX3 477 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 H0Y8X5 98 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 CD38P28907 300 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 MIPP30301 263 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 GKP32189 559 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 CCNHP51946 323 aaPredicted RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 SHC2P98077 582 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 DBX2Q6ZNG2 339 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 PRPF39Q86UA1 669 aaKnown RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 TRIM69Q86WT6 500 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 NETO2Q8NC67 525 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 FNIP1Q8TF40 1166 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 VOPP1Q96AW1 172 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 ISG20Q96AZ6 181 aaKnown RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 HMCESQ96FZ2 354 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 HEPHQ9BQS7 1158 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 HDAC8Q9BY41 377 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 DHX35Q9H5Z1 703 aaKnown RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 AP4E1Q9UPM8 1137 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 WASF3Q9UPY6 502 aa18.72■□□□□ 0.59
CLN3-202ENST00000355477 BZW2Q9Y6E2 419 aaKnown RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 ARID1BQ8NFD5 2236 aaPredicted RBP18.72■□□□□ 0.59
CLN3-202ENST00000355477 BUB1O43683 1085 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 RNGTTO60942 597 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 CBFA2T3O75081 653 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 SERPING1P05155 500 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 MYBL1P10243 752 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 DESP17661 470 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 C21orf59P57076 290 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 FOXC1Q12948 553 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 TRIP6Q15654 476 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 ZNF423Q2M1K9 1284 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 PRAMEF14Q5SWL7 426 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 ERMARDQ5T6L9 678 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 ERN2Q76MJ5 926 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 PLPP6Q8IY26 295 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 UMODL1-AS1Q8N2C9 162 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 OR6K2Q8NGY2 324 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 SETD7Q8WTS6 366 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 TRIM11Q96F44 468 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 KCTD15Q96SI1 283 aaPredicted RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 SNRNP25Q9BV90 132 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 ZDHHC6Q9H6R6 413 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 CATSPERBQ9H7T0 1116 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 PREBQ9HCU5 417 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 DYRK4Q9NR20 520 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 PCOLCE2Q9UKZ9 415 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 TPX2Q9ULW0 747 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 LUC7L2Q9Y383 392 aaKnown RBP18.71■□□□□ 0.59
CLN3-202ENST00000355477 USP24Q9UPU5 2620 aa18.71■□□□□ 0.59
CLN3-202ENST00000355477 ANKRD36A6QL64 1941 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 ASPMQ8IZT6 3477 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 A0A087X0T9 212 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 RASA4BC9J798 803 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 RASA4O43374 803 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 LRCH4O75427 683 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 RNF8O76064 485 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 FAM228BP0C875 321 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 IGF2RP11717 2491 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 SPINK2P20155 84 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 CASP14P31944 242 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 GEMIN4P57678 1058 aaKnown RBP18.7■□□□□ 0.58
CLN3-202ENST00000355477 YBEYP58557 167 aaPredicted RBP18.7■□□□□ 0.58
CLN3-202ENST00000355477 TPI1P60174 286 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 SERINC3Q13530 473 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 ZNF354CQ86Y25 554 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 KLK6Q92876 244 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 IQCDQ96DY2 449 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 BTBD3Q9Y2F9 522 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 PCDHGB2Q9Y5G2 931 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 SCINQ9Y6U3 715 aa18.7■□□□□ 0.58
CLN3-202ENST00000355477 KMT2BQ9UMN6 2715 aaPredicted RBP18.7■□□□□ 0.58
CLN3-202ENST00000355477 A0A1W2PQU0 124 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 EEF2KO00418 725 aaKnown RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 FGF10O15520 208 aaPredicted RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 TMCC1O94876 653 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 ITGB7P26010 798 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 HTR7P34969 479 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 IL9RQ01113 521 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 CCDC15Q0P6D6 951 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 HNRNPDQ14103 355 aaKnown RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 ZNF284Q2VY69 593 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 MYLK3Q32MK0 819 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 PARP15Q460N3 678 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 ATXN7L2Q5T6C5 722 aaPredicted RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 NAPEPLDQ6IQ20 393 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 NEK5Q6P3R8 708 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 RYBPQ8N488 228 aaPredicted RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 OR2AP1Q8NGE2 309 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 PPP1R16AQ96I34 528 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 THAP2Q9H0W7 228 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 LRRC19Q9H756 370 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 MRPL47Q9HD33 250 aaKnown RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 ZFR2Q9UPR6 939 aaKnown RBP18.69■□□□□ 0.58
CLN3-202ENST00000355477 CA5BQ9Y2D0 317 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 PCDHB9Q9Y5E1 797 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 PTPRBP23467 1997 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 LRRK1Q38SD2 2015 aa18.69■□□□□ 0.58
CLN3-202ENST00000355477 ZSCAN5CA6NGD5 496 aaPredicted RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 TLR4O00206 839 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms