RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ACTRT2Q8TDY3 377 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FAM172AQ8WUF8 416 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 MTBPQ96DY7 904 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 NSMCE3Q96MG7 304 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PRICKLE1Q96MT3 831 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PEBP4Q96S96 227 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 GBA3Q9H227 469 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 WDR70Q9NW82 654 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 MAFFQ9ULX9 164 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SCML2Q9UQR0 700 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 GREB1Q4ZG55 1949 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FAM47DPA6NHR8 397 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 CIB2O75838 187 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 LTFP02788 710 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 NEK2P51955 445 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 AP2B1P63010 937 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 EIF4EBP2Q13542 120 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SPARCL1Q14515 664 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SIX1Q15475 284 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SEL1L2Q5TEA6 688 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ANKS1BQ7Z6G8 1248 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SLC13A5Q86YT5 568 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 NUP93Q8N1F7 819 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PGLYRP2Q96PD5 576 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SLITRK1Q96PX8 696 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 GPATCH1Q9BRR8 931 aaKnown RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ZBED2Q9BTP6 218 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 MTIF3Q9H2K0 278 aaKnown RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 AFF4Q9UHB7 1163 aaKnown RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FADS3Q9Y5Q0 445 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PLXNA4Q9HCM2 1894 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 KANSL1LA0AUZ9 987 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 LCHNA4D1U4 455 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 OR1D2P34982 312 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PCYT1AP49585 367 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 GPR15P49685 360 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 KLF1Q13351 362 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 RAB33AQ14088 237 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 TCHHL1Q5QJ38 904 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 SYPL2Q5VXT5 272 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PPP2R2DQ66LE6 453 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 KIAA1841Q6NSI8 718 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 LVRNQ6Q4G3 990 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PACS1Q6VY07 963 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 RBM15BQ8NDT2 890 aaKnown RBP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF461Q8TAF7 563 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 TBCBQ99426 244 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 POU2F3Q9UKI9 436 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 C5orf67F2Z3F1 127 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 TLL1O43897 1013 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 CTSAP10619 480 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 RPL17P18621 184 aaKnown RBP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 ADRA1DP25100 572 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 CREMQ03060 361 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 KRT17Q04695 432 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 TLR1Q15399 786 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 CYP2A13Q16696 494 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 DDR2Q16832 855 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 COL13A1Q5TAT6 717 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 RNF111Q6ZNA4 994 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 ACAD11Q709F0 780 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 SNX29P2Q8IUI4 249 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PRELID2Q8N945 189 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 DTX3Q8N9I9 347 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 DPF3Q92784 378 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 TRIM62Q9BVG3 475 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 FBXO44Q9H4M3 255 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PALMDQ9NP74 551 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNE1-203ENST00000354674 MKS1Q9NXB0 559 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 PCDHGA8Q9Y5G5 932 aa10.27□□□□□ -0.77
SYNE1-203ENST00000354674 SMIM31A0A1B0GVY4 71 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 MDM4O15151 490 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 IGLV3-25P01717 112 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 URODP06132 367 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SMIM18P0DKX4 95 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 RARGP13631 454 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 UQCRBP14927 111 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 ATF2P15336 505 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 DDX5P17844 614 aaKnown RBP10.26□□□□□ -0.77
SYNE1-203ENST00000354674 BMPR1AP36894 532 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 RPL5P46777 297 aaKnown RBP10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SLC25A3Q00325 362 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 PPP2R5EQ16537 467 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 CYP1B1Q16678 543 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 BOLA3Q53S33 107 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SCD5Q86SK9 330 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SCN4BQ8IWT1 228 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 HPS1Q92902 700 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 ATP2A3Q93084 1043 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 FAM149B1Q96BN6 582 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF512Q96ME7 567 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-203ENST00000354674 HERPUD2Q9BSE4 406 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 NMUR2Q9GZQ4 415 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 EHD1Q9H4M9 534 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF395Q9H8N7 513 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-203ENST00000354674 PPARGC1AQ9UBK2 798 aaKnown RBP10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SLC7A8Q9UHI5 535 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 SSX2IPQ9Y2D8 614 aa10.26□□□□□ -0.77
SYNE1-203ENST00000354674 FAM237BA0A1B0GVD1 139 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms