RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 BCO2Q9BYV7 579 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 IL22Q9GZX6 179 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 GID8Q9NWU2 228 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 DTLQ9NZJ0 730 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 ADAM28Q9UKQ2 775 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 RBMX2Q9Y388 322 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 TCAF1Q9Y4C2 921 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SLC30A1Q9Y6M5 507 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 KIAA1217Q5T5P2 1943 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 A0A0A0MRY4 1105 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 IQCA1LA6NCM1 817 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 TCP10L2B9ZVM9 353 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 GOLGA8TH3BQL2 631 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 KCNH1O95259 989 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PSAPP07602 524 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PABPC1P11940 636 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 RCVRNP35243 200 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 IDUAP35475 653 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 GNL1P36915 607 aaPredicted RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 GLRBP48167 497 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 ATXN1P54253 815 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ACTR2P61160 394 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 GRSF1Q12849 480 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS39-202ENST00000348544 GRM1Q13255 1194 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CAPSQ13938 189 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 OXA1LQ15070 435 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 DGKDQ16760 1214 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 LIPMQ5VYY2 423 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 HEATR6Q6AI08 1181 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ABHD15Q6UXT9 468 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 DPH6Q7L8W6 267 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CADM3Q8N126 398 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 COLGALT1Q8NBJ5 622 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 STON2Q8WXE9 905 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 KHSRPQ92945 711 aaKnown RBP eCLIP6.88□□□□□ -1.315e-6■□□□□ 8.2
VPS39-202ENST00000348544 FEM1CQ96JP0 617 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 MAELQ96JY0 434 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 SPATA13Q96N96 652 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CSF3RQ99062 836 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 C1QTNF1Q9BXJ1 281 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 SOX17Q9H6I2 414 aaPredicted RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 VRTNQ9H8Y1 702 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 DNMT3BQ9UBC3 853 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 SUN2Q9UH99 717 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 SIX4Q9UIU6 781 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 B3GNT3Q9Y2A9 372 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CPQQ9Y646 472 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 C1orf232A0A0U1RR37 186 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 POLRMTO00411 1230 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 LSM1O15116 133 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ESRRBO95718 433 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 MPOP05164 745 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PFKMP08237 780 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 JAK1P23458 1154 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PSMB4P28070 264 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 TTKP33981 857 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 SPRP35270 261 aaPredicted RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 IREB2P48200 963 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 CSRP3P50461 194 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 LDLRAP1Q5SW96 308 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 C6orf183Q5T699 404 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 INTS11Q5TA45 600 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 STRIP1Q5VSL9 837 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 ARHGEF16Q5VV41 709 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 NCBP2-AS2Q69YL0 99 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 C8orf82Q6P1X6 216 aaPredicted RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 LAYNQ6UX15 382 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PODNQ7Z5L7 613 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 SIX6OS1Q8N1H7 587 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 OR13F1Q8NGS4 319 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CYGBQ8WWM9 190 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 HTR3CQ8WXA8 447 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 PBXIP1Q96AQ6 731 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 WNK4Q96J92 1243 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 ALPK1Q96QP1 1244 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 MCMBPQ9BTE3 642 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 EIF2AQ9BY44 585 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ARMC1Q9NVT9 282 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 GPRC5DQ9NZD1 345 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 TMEM181Q9P2C4 612 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 VTI1BQ9UEU0 232 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 CPSF3Q9UKF6 684 aaKnown RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ANKRD31Q8N7Z5 1873 aa6.88□□□□□ -1.31
VPS39-202ENST00000348544 COL2A1P02458 1487 aaPredicted RBP6.88□□□□□ -1.31
VPS39-202ENST00000348544 ZCWPW2A0A1B0GU75 182 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 TARM1B6A8C7 271 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 DPYSL4O14531 572 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MDM4O15151 490 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 ACOX3O15254 700 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PHGDHO43175 533 aaKnown RBP6.87□□□□□ -1.31
VPS39-202ENST00000348544 B4GAT1O43505 415 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 MSCO60682 206 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CILPO75339 1184 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 JRKO75564 520 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CLPXO76031 633 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CPNE6O95741 557 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 POLBP06746 335 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 CCNA2P20248 432 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 OPRL1P41146 370 aa6.87□□□□□ -1.31
VPS39-202ENST00000348544 PTPN9P43378 593 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms