RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SLC35E2BP0CK96 405 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 ALOX15P16050 662 aaPredicted RBP19.64■□□□□ 0.73
COL9A3-201ENST00000343916 NUMBP49757 651 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 CNGA3Q16281 694 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 SNX30Q5VWJ9 437 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 CCSAPQ6IQ19 270 aaPredicted RBP19.64■□□□□ 0.73
COL9A3-201ENST00000343916 MFSD6LQ8IWD5 586 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 KLHDC8BQ8IXV7 354 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 TMEM151AQ8N4L1 468 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 UROC1Q96N76 676 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 C1QTNF1Q9BXJ1 281 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 NMRK1Q9NWW6 199 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 SORCS3Q9UPU3 1222 aa19.64■□□□□ 0.73
COL9A3-201ENST00000343916 LOC100653049A0A140TA62 436 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 KRT34O76011 436 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 PRKAR2AP13861 404 aaKnown RBP19.63■□□□□ 0.73
COL9A3-201ENST00000343916 DNAL1Q4LDG9 190 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 RALGPS1Q5JS13 557 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 PIK3R6Q5UE93 754 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 RIPOR1Q6ZS17 1223 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 KLHDC9Q8NEP7 349 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 CDH19Q9H159 772 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 MYO16Q9Y6X6 1858 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 KCNU1A8MYU2 1149 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 DCXO43602 365 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 TYMPP19971 482 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 CSRP3P50461 194 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 USP46P62068 366 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 CFAP157Q5JU67 520 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 CEP97Q8IW35 865 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 TTC9BQ8N6N2 239 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 RTL3Q8N8U3 475 aaKnown RBP19.63■□□□□ 0.73
COL9A3-201ENST00000343916 PNPLA1Q8N8W4 532 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 MRGPRX2Q96LB1 330 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 YIPF3Q9GZM5 350 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 OXSMQ9NWU1 459 aa19.63■□□□□ 0.73
COL9A3-201ENST00000343916 AP3B1O00203 1094 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 PSMD3O43242 534 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 ZMPSTE24O75844 475 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 KLHL2O95198 593 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 LINGO3P0C6S8 592 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 ADRA1AP35348 466 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 ARCN1P48444 511 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 SEPT6Q14141 434 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 TRIM71Q2Q1W2 868 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 CLLU1OSQ5K130 101 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 ANO7Q6IWH7 933 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 CENPLQ8N0S6 344 aaPredicted RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 LZTR1Q8N653 840 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 TDRD5Q8NAT2 981 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 SCYL1Q96KG9 808 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 TRPV6Q9H1D0 765 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 C1orf21Q9H246 121 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 NOL6Q9H6R4 1146 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 DNAJB4Q9UDY4 337 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 IPO11Q9UI26 975 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 PCDHB8Q9UN66 801 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 RUVBL2Q9Y230 463 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 CDY1Q9Y6F8 540 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 PATJQ8NI35 1801 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 GOLGA8QA0A0J9YX86 632 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 GOLGA8OA6NCC3 632 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 GOLGA8NF8WBI6 632 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 LIN7AO14910 233 aaPredicted RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 CA12O43570 354 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 MPSTP25325 297 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 OR1G1P47890 313 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 MAXP61244 160 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 MUM1Q2TAK8 710 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 PPHLN1Q8NEY8 458 aaKnown RBP19.62■□□□□ 0.73
COL9A3-201ENST00000343916 CFAP61Q8NHU2 1237 aa19.62■□□□□ 0.73
COL9A3-201ENST00000343916 A0A088AWK7 358 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 ZBTB14O43829 449 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 SORBS2O94875 1100 aaKnown RBP19.61■□□□□ 0.73
COL9A3-201ENST00000343916 TBX18O95935 607 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 RPLP2P05387 115 aaKnown RBP19.61■□□□□ 0.73
COL9A3-201ENST00000343916 CD1EP15812 388 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 SLC1A2P43004 574 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 COPAP53621 1224 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 GEMP55040 296 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 MLLT6P55198 1093 aaPredicted RBP19.61■□□□□ 0.73
COL9A3-201ENST00000343916 SLC34A1Q06495 639 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 C1orf146Q5VVC0 180 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 GLB1LQ6UWU2 654 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 FSTL5Q8N475 847 aaPredicted RBP19.61■□□□□ 0.73
COL9A3-201ENST00000343916 DNAJC9Q8WXX5 260 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 OR52B2Q96RD2 323 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 CYP4F11Q9HBI6 524 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 STX18Q9P2W9 335 aaKnown RBP19.61■□□□□ 0.73
COL9A3-201ENST00000343916 TCAF1Q9Y4C2 921 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 A6NHS1 94 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 ENO4A6NNW6 628 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 AURKAO14965 403 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 SOAT2O75908 522 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 DNAJB2P25686 324 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 GRIA4P48058 902 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 NKX3-2P78367 333 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 EPGNQ6UW88 154 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 B3GALT6Q96L58 329 aa19.61■□□□□ 0.73
COL9A3-201ENST00000343916 SERPINB11Q96P15 392 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms