RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PCNAP12004 261 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 TMPRSS15P98073 1019 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 NFATC3Q12968 1075 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 CUL2Q13617 745 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 SEMA3AQ14563 771 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 DLG2Q15700 870 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 ZNF544Q6NX49 715 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 IKBIPQ70UQ0 350 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 ANO5Q75V66 913 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 PIP4K2CQ8TBX8 421 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 SMPDL3BQ92485 455 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 VCPIP1Q96JH7 1222 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 BTN2A3PQ96KV6 586 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 BTBD9Q96Q07 612 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 RIOX1Q9H6W3 641 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 CNOT10Q9H9A5 744 aaKnown RBP8.52□□□□□ -1.04
HMGB1-203ENST00000341423 IQANK1A0A1B0GTG1 560 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 B4GAT1O43505 415 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 PFKFB1P16118 471 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 CCL11P51671 97 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 ARHGDIAP52565 204 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 RAD23AP54725 363 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 RWDD2BP57060 319 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 PDE1CQ14123 709 aaPredicted RBP8.52□□□□□ -1.05
HMGB1-203ENST00000341423 PIGHQ14442 188 aaPredicted RBP8.52□□□□□ -1.05
HMGB1-203ENST00000341423 ZC3H12AQ5D1E8 599 aaKnown RBP8.52□□□□□ -1.05
HMGB1-203ENST00000341423 OR8K1Q8NGG5 319 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 RIN3Q8TB24 985 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 B3GALT6Q96L58 329 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 CLIC6Q96NY7 704 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 BRPF3Q9ULD4 1205 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.52□□□□□ -1.05
HMGB1-203ENST00000341423 PRAMEF26H0Y7S4 382 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 FCHO1O14526 889 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 CD46P15529 392 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 TRPC1P48995 793 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 BLVRAP53004 296 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 GPR17Q13304 367 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 COBLL1Q53SF7 1204 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 CNPY4Q8N129 248 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 MAD2L2Q9UI95 211 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 PCDHGB5Q9Y5G0 923 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 C1orf232A0A0U1RR37 186 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 GNGT2O14610 69 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 TFECO14948 347 aaPredicted RBP8.52□□□□□ -1.05
HMGB1-203ENST00000341423 TGM5O43548 720 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 DPM1O60762 260 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 RFPL3O75679 317 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 TOR1AIP2Q8NFQ8 470 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 FAM71BQ8TC56 605 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 FAIM2Q9BWQ8 316 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 SLC39A8Q9C0K1 460 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 COMMD8Q9NX08 183 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 KLHL28Q9NXS3 571 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 BCAP29Q9UHQ4 241 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 GGA2Q9UJY4 613 aa8.52□□□□□ -1.05
HMGB1-203ENST00000341423 LEFTY2O00292 366 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 C6P13671 934 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 ITPKBP27987 946 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 MMP13P45452 471 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 TMPRSS3P57727 454 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 DHX9Q08211 1270 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 IFT88Q13099 833 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 DUSP6Q16828 381 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 ISLR2Q6UXK2 745 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 MINDY1Q8N5J2 469 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 CCDC124Q96CT7 223 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 GALNT8Q9NY28 637 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 TSPAN16Q9UKR8 245 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 FBXO4Q9UKT5 387 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 ATRXP46100 2492 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 PLEKP08567 350 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SLC35G6P0C7Q6 338 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 PGDP52209 483 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SCRN1Q12765 414 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SLC39A14Q15043 492 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 C1orf131Q8NDD1 294 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SRFBP1Q8NEF9 429 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 KIF18AQ8NI77 898 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 CAPZA3Q96KX2 299 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 IPO13O94829 963 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 MICAL2O94851 1124 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 GLP2RO95838 553 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 NCF2P19878 526 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 U2AF2P26368 475 aaKnown RBP eCLIP8.51□□□□□ -1.051e-7■■■■■ 37.5
HMGB1-203ENST00000341423 ALDH9A1P49189 494 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 OVGP1Q12889 678 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 C1orf61Q13536 156 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 GLT6D1Q7Z4J2 308 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 TMEM151BQ8IW70 566 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SLC39A11Q8N1S5 342 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 KCTD13Q8WZ19 329 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 ZFYVE19Q96K21 471 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 ART5Q96L15 291 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 HSFY1Q96LI6 401 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 IMPACTQ9P2X3 320 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 CDC23Q9UJX2 597 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 PRKAB1Q9Y478 270 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SPHKAPQ2M3C7 1700 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SPTBN2O15020 2390 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms