RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MBD4O95243 580 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 KLKB1P03952 638 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 URODP06132 367 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 MMP3P08254 477 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 COX7A2P14406 83 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 GGT5P36269 586 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 TSPAN7P41732 249 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 DPP6P42658 865 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 GPR12P47775 334 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 ME1P48163 572 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 CCT4P50991 539 aaKnown RBP3.58□□□□□ -1.84
HMGB1-201ENST00000326004 ARSFP54793 590 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 CASP6P55212 293 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 YWHAZP63104 245 aaKnown RBP3.58□□□□□ -1.84
HMGB1-201ENST00000326004 EFNB1P98172 346 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 PTP4A2Q12974 167 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 TDGQ13569 410 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 PKP1Q13835 747 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 ME3Q16798 604 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 EDRF1Q3B7T1 1238 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 FBXO43Q4G163 708 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 FAM69AQ5T7M9 428 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 ASPHD1Q5U4P2 390 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 FAAH2Q6GMR7 532 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 HMBOX1Q6NT76 420 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 INO80CQ6PI98 192 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-201ENST00000326004 DSTYKQ6XUX3 929 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 SERPINA11Q86U17 422 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 CAMK1DQ8IU85 385 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 MMP21Q8N119 569 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 NANOGP1Q8N7R0 232 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 KDM1BQ8NB78 822 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 C11orf65Q8NCR3 313 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 OR4N2Q8NGD1 307 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 B3GNT4Q9C0J1 378 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 CXorf56Q9H5V9 222 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 FZD3Q9NPG1 666 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 KCND2Q9NZV8 630 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 MPP6Q9NZW5 540 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 PEMTQ9UBM1 199 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 HEY2Q9UBP5 337 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 SEL1LQ9UBV2 794 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 CDH22Q9UJ99 828 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 COG5Q9UP83 839 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 RAP2CQ9Y3L5 183 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 EIF4G1Q04637 1599 aaKnown RBP3.58□□□□□ -1.84
HMGB1-201ENST00000326004 A0A1W2PPC1 479 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 WDR91A4D1P6 747 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PABPN1LA6NDY0 278 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 DNAJC9-AS1A6NH13 148 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 A6NNC1 897 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 SOCS2O14508 198 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM63AO94886 807 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 CHRNB1P11230 501 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 ATP1A3P13637 1013 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PRF1P14222 555 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 CD72P21854 359 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TBXAS1P24557 533 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TNFSF8P32971 234 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PTGER1P34995 402 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 RFC1P35251 1148 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 CENPAP49450 140 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 UFM1P61960 85 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 CYP4A11Q02928 519 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 FOXD4Q12950 439 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 KLF9Q13886 244 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TWIST1Q15672 202 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 MANEAQ5SRI9 462 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 UBAP2Q5T6F2 1119 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM81Q6P7N7 255 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 H1FNTQ75WM6 255 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 RSRC2Q7L4I2 434 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TADA2BQ86TJ2 420 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TRIM74Q86UV6 250 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TRIM73Q86UV7 250 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 CHD1LQ86WJ1 897 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 FAM217AQ8IXS0 508 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 LRRC57Q8N9N7 239 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PPHLN1Q8NEY8 458 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 GDPD5Q8WTR4 605 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM174Q8WUU8 243 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 HDAC2Q92769 488 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 SKA1Q96BD8 255 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 MSI2Q96DH6 328 aaKnown RBP3.57□□□□□ -1.84
HMGB1-201ENST00000326004 KIF1BPQ96EK5 621 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 C7orf26Q96N11 449 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PDCL3Q9H2J4 239 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 SLC32A1Q9H598 525 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 MAP6D1Q9H9H5 199 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 IRAK4Q9NWZ3 460 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TAS2R10Q9NYW0 307 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 BICRAQ9NZM4 1560 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 KIAA1456Q9P272 454 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 TBC1D14Q9P2M4 693 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 PCDHGB5Q9Y5G0 923 aa3.57□□□□□ -1.84
HMGB1-201ENST00000326004 UNC13AQ9UPW8 1703 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 COL3A1P02461 1466 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-201ENST00000326004 ITIH6Q6UXX5 1313 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 LY6G6EA0A0G2JKS1 128 aa3.56□□□□□ -1.84
HMGB1-201ENST00000326004 TEX13CA0A0J9YWL9 993 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms