RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FBXO21O94952 628 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CSPG5O95196 566 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 MT-CYBP00156 380 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 SBK3P0C264 359 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 HNRNPLP14866 589 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIG3-201ENST00000262327 GLUD2P49448 558 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 TKTL1P51854 596 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SNX16P57768 344 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 TPI1P60174 286 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SP3Q02447 781 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 NRF1Q16656 503 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 INSCQ1MX18 579 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 MFSD14CQ5VZR4 134 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SEL1L3Q68CR1 1132 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ARHGAP17Q68EM7 881 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CYS1Q717R9 158 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 GPRIN1Q7Z2K8 1008 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ADGRG6Q86SQ4 1221 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ZDHHC17Q8IUH5 632 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SIX6OS1Q8N1H7 587 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 KYQ8NBH2 561 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 MPP4Q96JB8 637 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 PHF12Q96QT6 1004 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SIKE1Q9BRV8 207 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 RTKNQ9BST9 563 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ULBP1Q9BZM6 244 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 STN1Q9H668 368 aaKnown RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 CYP4F12Q9HCS2 524 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 TLK1Q9UKI8 766 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SMIM28A0A1B0GU29 152 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 GRID2O43424 1007 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 DNAJA2O60884 412 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 USP17L7P0C7H9 530 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SRGAP2BP0DMP2 458 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 NCAM1P13591 858 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ALOX15P16050 662 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 FUT4P22083 530 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 GLDCP23378 1020 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CDKL1Q00532 357 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CBLBQ13191 982 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CYLC2Q14093 348 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 PRAMEF19Q5SWL8 479 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 WSCD1Q658N2 575 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 LAYNQ6UX15 382 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 RBM44Q6ZP01 1051 aaKnown RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 ARHGAP36Q6ZRI8 547 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 GK5Q6ZS86 529 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 B3GALNT2Q8NCR0 500 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 TMEM40Q8WWA1 233 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 JADE3Q92613 823 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 LENG1Q96BZ8 264 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 PRPF18Q99633 342 aaKnown RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 PKP2Q99959 881 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 FERMT1Q9BQL6 677 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 PCDHAC1Q9H158 963 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ZDHHC7Q9NXF8 308 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ADA2Q9NZK5 511 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SPATA7Q9P0W8 599 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 AP4B1Q9Y6B7 739 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SHROOM3Q8TF72 1996 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 DCLK1O15075 740 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 CRTAMO95727 393 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 AP2A1O95782 977 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ATP5BP06576 529 aaKnown RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 FAM200BP0CF97 657 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 TSPAN8P19075 237 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 GABRB3P28472 473 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 PLK1P53350 603 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SLC27A1Q6PCB7 646 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 BNC2Q6ZN30 1099 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 FSTL5Q8N475 847 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 TTC39CQ8N584 583 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 NXNL1Q96CM4 212 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 ZFP42Q96MM3 310 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 KLHL32Q96NJ5 620 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 SIK2Q9H0K1 926 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 AP5M1Q9H0R1 490 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 VCX3BQ9H321 246 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 DMAP1Q9NPF5 467 aaPredicted RBP10.2□□□□□ -0.78
LIG3-201ENST00000262327 TMEM30AQ9NV96 361 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 OXSMQ9NWU1 459 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 DDIT4Q9NX09 232 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 PSMD13Q9UNM6 376 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 LZTS1Q9Y250 596 aa10.2□□□□□ -0.78
LIG3-201ENST00000262327 RGSL1A5PLK6 1076 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 MEIS3P2A8K0S8 358 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 MATN2O00339 956 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 DYNC1LI2O43237 492 aaPredicted RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 HUS1O60921 280 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 FYNP06241 537 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 SMIM18P0DKX4 95 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 AKR1A1P14550 325 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 HOXD10P28358 340 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 ADRA1BP35368 520 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 CPT1AP50416 773 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 RPL14P50914 215 aaKnown RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 ART3Q13508 389 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 DPYSQ14117 519 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 ZBTB6Q15916 424 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 KIAA0319Q5VV43 1072 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms