RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 LRATO95237 230 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 HLA-DQA2P01906 255 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 MEA1Q16626 185 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 ZIK1Q3SY52 487 aaPredicted RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 RSBN1Q5VWQ0 802 aaPredicted RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 C2orf73Q8N5S3 287 aaPredicted RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 C2orf49Q9BVC5 232 aaPredicted RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 PABPC1P11940 636 aaKnown RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 ME2P23368 584 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 DGKAP23743 735 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 C19orf18Q8NEA5 215 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 C1orf50Q9BV19 199 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 SPRTNQ9H040 489 aaPredicted RBP18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 ADGRA3Q8IWK6 1321 aa18.9■□□□□ 0.62
SMARCC1-201ENST00000254480 HPCAL1P37235 193 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 SP3Q02447 781 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 SPIDRQ14159 915 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 COLGALT2Q8IYK4 626 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 PARP8Q8N3A8 854 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 GRIP2Q9C0E4 1043 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 IL22Q9GZX6 179 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 ENTPD4Q9Y227 616 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 DISP2A7MBM2 1401 aa18.89■□□□□ 0.62
SMARCC1-201ENST00000254480 ASZ1Q8WWH4 475 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 H0Y858 1186 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 MDM4O15151 490 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 FCGR1AP12314 374 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 TFEBP19484 476 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 NEK3P51956 506 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 UBAP2LQ14157 1087 aaKnown RBP18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 CYP2A13Q16696 494 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 TRIM71Q2Q1W2 868 aaKnown RBP18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 ALKBH2Q6NS38 261 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 MAB21L3Q8N8X9 362 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 RNF157Q96PX1 679 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 ZYG11BQ9C0D3 744 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 CAB39LQ9H9S4 337 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 STMN3Q9NZ72 180 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 MST1RQ04912 1400 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 SF3B1O75533 1304 aaKnown RBP eCLIP18.89■□□□□ 0.614e-6■■■■■ 99.6
SMARCC1-201ENST00000254480 LTA4HP09960 611 aaKnown RBP18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 PAICSP22234 425 aaKnown RBP18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 STXBP5Q5T5C0 1151 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 PARGQ86W56 976 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 CERS2Q96G23 380 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 ACAT2Q9BWD1 397 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 EPN2O95208 641 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 HNRNPLP14866 589 aaKnown RBP eCLIP18.89■□□□□ 0.617e-8■■□□□ 12.9
SMARCC1-201ENST00000254480 PTPRNQ16849 979 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 PLA2G4EQ3MJ16 856 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 ARMCX4Q5H9R4 360 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 C11orf88Q6PI97 169 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 LRRC55Q6ZSA7 311 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 SH3RF1Q7Z6J0 888 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 CDYL2Q8N8U2 506 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 PROX1Q92786 737 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 MECRQ9BV79 373 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 SLIT1O75093 1534 aa18.89■□□□□ 0.61
SMARCC1-201ENST00000254480 PSMA3P25788 255 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 FSTL1Q12841 308 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 REXO4Q9GZR2 422 aaKnown RBP18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 PAPOLBQ9NRJ5 636 aaKnown RBP18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 CIDEBQ9UHD4 219 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 PCDHGA4Q9Y5G9 962 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 GRIA4P48058 902 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SNRPD1P62314 119 aaKnown RBP18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 FAM151BQ6UXP7 276 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 CLVS1Q8IUQ0 354 aaPredicted RBP18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 BTBD9Q96Q07 612 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 PHACTR1Q9C0D0 580 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 CYP1A2P05177 515 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 GCNT7Q6ZNI0 430 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 NEK10Q6ZWH5 1172 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 FGFBP2Q9BYJ0 223 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SERHL2Q9H4I8 314 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SERHLQ9NQF3 203 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 HK2P52789 917 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SMAD3P84022 425 aaKnown RBP18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SLC34A1Q06495 639 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 OR10G6Q8NH81 332 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 ARMC7Q9H6L4 198 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 MCM8Q9UJA3 840 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 CDH9Q9ULB4 789 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SPATA31C1P0DKV0 1188 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 SEMA5AQ13591 1074 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 PLPP4Q5VZY2 271 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 MKL1Q969V6 931 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 DNAJC5Q9H3Z4 198 aa18.88■□□□□ 0.61
SMARCC1-201ENST00000254480 IDH2P48735 452 aaKnown RBP18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 COX10Q12887 443 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 MAP2K5Q13163 448 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 ITGB3BPQ13352 177 aaPredicted RBP18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 PABPC1LQ4VXU2 614 aaKnown RBP18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 CCDC92Q53HC0 331 aaPredicted RBP18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 CRTC3Q6UUV7 619 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 JOSD2Q8TAC2 188 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 LENG1Q96BZ8 264 aaPredicted RBP18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 DEFB118Q96PH6 123 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 LRRC74BQ6ZQY2 392 aa18.87■□□□□ 0.61
SMARCC1-201ENST00000254480 FAM71AQ8IYT1 594 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms