RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TRABD2AQ86V40 505 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 LRRC6Q86X45 466 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 C1orf210Q8IVY1 113 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 NUP93Q8N1F7 819 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 NAT8LQ8N9F0 302 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 ARMC2Q8NEN0 867 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 KLHL29Q96CT2 875 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 SMARCD1Q96GM5 515 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PPP1R36Q96LQ0 422 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 NELL2Q99435 816 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 DUSP16Q9BY84 665 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 TKTL2Q9H0I9 626 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 IRF2BPLQ9H1B7 796 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 DMAP1Q9NPF5 467 aaPredicted RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 DUS2Q9NX74 493 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 DTLQ9NZJ0 730 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 RABGEF1Q9UJ41 708 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PHTF1Q9UMS5 762 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 RNF103O00237 685 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 COPEO14579 308 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 CHADO15335 359 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 JCHAINP01591 159 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SLC4A1P02730 911 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 MGAT1P26572 445 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 MATKP42679 507 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 MAGEA11P43364 429 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ITPRIPL2Q3MIP1 535 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 IL31Q6EBC2 164 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 CEP128Q6ZU80 1094 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 UNC93AQ86WB7 457 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 TTC39CQ8N584 583 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 MAML1Q92585 1016 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 DNASE1L2Q92874 299 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ZNF317Q96PQ6 595 aaPredicted RBP8.82□□□□□ -1
VPS4B-201ENST00000238497 G3BP2Q9UN86 482 aaKnown RBP8.82□□□□□ -1
VPS4B-201ENST00000238497 MDM4O15151 490 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 PAPLNO95428 1278 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ARSAP15289 507 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ERCC2P18074 760 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 WEE1P30291 646 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SCTRP47872 440 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 STARD6P59095 220 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SETDB1Q15047 1291 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 TMEM150AQ86TG1 271 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 HTR3CQ8WXA8 447 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ERP27Q96DN0 273 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 RMDN2Q96LZ7 410 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 VPS11Q9H270 941 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ZNF395Q9H8N7 513 aaPredicted RBP8.82□□□□□ -1
VPS4B-201ENST00000238497 TMEM30AQ9NV96 361 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 CPQQ9Y646 472 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SPECC1L-ADORA2AF8WAN1 911 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SNX3O60493 162 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ERVK-10P10266 1014 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 BGNP21810 368 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ACADSBP45954 432 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 GABRB2P47870 512 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 SLC5A3P53794 718 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 PCSK7Q16549 785 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 LPAL2Q16609 132 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ANKRD20A2Q5SQ80 823 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ANKRD20A1Q5TYW2 823 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ANKRD20A3Q5VUR7 823 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 TXNDC11Q6PKC3 985 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 TFAP2DQ7Z6R9 452 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 CDKL3Q8IVW4 592 aaPredicted RBP8.82□□□□□ -1
VPS4B-201ENST00000238497 NDUFAF2Q8N183 169 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 PNPLA1Q8N8W4 532 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 BHMTQ93088 406 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 P2RY11Q96G91 374 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 RILPQ96NA2 401 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 TMEM237Q96Q45 408 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 PKMYT1Q99640 499 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 KCNH6Q9H252 994 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 ECT2Q9H8V3 914 aa8.82□□□□□ -1
VPS4B-201ENST00000238497 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.82□□□□□ -1
VPS4B-201ENST00000238497 IQANK1A0A1B0GTG1 560 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 EIF4E1BA6NMX2 242 aaKnown RBP8.81□□□□□ -1
VPS4B-201ENST00000238497 H3BRJ5 948 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 SETSIPP0DME0 302 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 DDX6P26196 483 aaKnown RBP eCLIP8.81□□□□□ -1
VPS4B-201ENST00000238497 CTHP32929 405 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 TMPRSS15P98073 1019 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 RUNX3Q13761 415 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 KLHL38Q2WGJ6 581 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 BTBD8Q5XKL5 378 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 SPNS2Q8IVW8 549 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 OR52K1Q8NGK4 314 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 CKAP2Q8WWK9 683 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 SMOQ99835 787 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 USP29Q9HBJ7 922 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 POPDC2Q9HBU9 364 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 GMIPQ9P107 970 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 CFAP97Q9P2B7 532 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 OR12D3Q9UGF7 316 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 OTOGLQ3ZCN5 2332 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 TPRP12270 2363 aaKnown RBP8.81□□□□□ -1
VPS4B-201ENST00000238497 CFAP69A5D8W1 941 aa8.81□□□□□ -1
VPS4B-201ENST00000238497 RTN3O95197 1032 aaPredicted RBP8.81□□□□□ -1
VPS4B-201ENST00000238497 LTFP02788 710 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms