RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CCDC28AQ8IWP9 274 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 MYO1HQ8N1T3 1032 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CLASRPQ8N2M8 674 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 PGBD5Q8N414 524 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 LINC00612Q8N6U2 182 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 TEX45Q8NA69 505 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KBTBD3Q8NAB2 608 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 FGFBP3Q8TAT2 258 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 LNX1Q8TBB1 728 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 HCAR2Q8TDS4 363 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PHKBQ93100 1093 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 C18orf8Q96DM3 657 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SLC39A13Q96H72 371 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ZNF419Q96HQ0 510 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 SUCLG2Q96I99 432 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SNX22Q96L94 193 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 GFM1Q96RP9 751 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 RBM4BQ9BQ04 359 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 PAAF1Q9BRP4 392 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 TRAF4Q9BUZ4 470 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 SARGQ9BW04 601 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 COLEC11Q9BWP8 271 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 APOL5Q9BWW9 433 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 NAA15Q9BXJ9 866 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 STK31Q9BXU1 1019 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 LCE3DQ9BYE3 92 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PDZD7Q9H5P4 517 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 FAM204AQ9H8W3 233 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ERVMER34-1Q9H9K5 563 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PTPRHQ9HD43 1115 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KCNK9Q9NPC2 374 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 FSCN3Q9NQT6 498 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SACM1LQ9NTJ5 587 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ZDHHC18Q9NUE0 388 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 LRFN1Q9P244 771 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 MYO1AQ9UBC5 1043 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ZNF212Q9UDV6 495 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CORO2BQ9UQ03 480 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 HPSEQ9Y251 543 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KCNK7Q9Y2U2 307 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ZNF711Q9Y462 761 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PCDHGB6Q9Y5F9 930 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ZHX2Q9Y6X8 837 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 FRMPD2Q68DX3 1309 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 LOC105369274A0A096LPK9 316 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TNFSF12-TNFSF13A0A0A6YY99 330 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 LOC102723532A0A0G2JNH3 316 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 A0A1B0GVM2 712 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM234BA2RU67 622 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A18PA6NE21 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CXorf65A6NEN9 183 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A16PA6NEW6 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 POM121BA6NF01 834 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MBD3L5A6NJ08 208 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A9PA6NNJ1 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 C17orf100A8MU93 164 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A5PA8MXJ8 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 RASA4BC9J798 803 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 AREL1O15033 823 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 KPNA5O15131 536 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MSI1O43347 362 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 RASA4O43374 803 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ITM2AO43736 263 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PCDH7O60245 1069 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PQBP1O60828 265 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE7O76087 117 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FGF18O76093 207 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SORBS2O94875 1100 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 NDST3O95803 873 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A15PP0C7V4 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A14PP0C7W9 464 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE12FP0CL80 117 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE12GP0CL81 117 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE12IP0CL82 117 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 IGHV4-30-4P0DP06 118 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 HARSP12081 509 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 MYL4P12829 197 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ENO3P13929 434 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 EGR1P18146 543 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 RPL17P18621 184 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 ATF3P18847 181 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CHRNA5P30532 468 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TLX1P31314 330 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 ATICP31939 592 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GNALP38405 381 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PPP3CCP48454 512 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PRIM2P49643 509 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CLK1P49759 484 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 FUT6P51993 359 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SLC37A1P57057 533 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM3BP58499 235 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 NLRP5P59047 1200 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ECT2LQ008S8 904 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE1Q13065 139 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GAGE4Q13068 117 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZBTB17Q13105 803 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ATP1A4Q13733 1029 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PKP1Q13835 747 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GALNT3Q14435 633 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms