RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	EP400NL	Q6ZTU2	488 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	OTOP3	Q7RTS5	596 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	IQCK	Q8N0W5	287 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	PDCD7	Q8N8D1	485 aa	Known RBP	11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	WFDC5	Q8TCV5	224 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	BHMT	Q93088	406 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	LMLN	Q96KR4	655 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	GAS2L1	Q99501	681 aa	Predicted RBP	11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	GORASP1	Q9BQQ3	440 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	BBS2	Q9BXC9	721 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	ACBD3	Q9H3P7	528 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	SEMA4A	Q9H3S1	761 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	ZFP14	Q9HCL3	533 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	SAYSD1	Q9NPB0	183 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	NT5M	Q9NPB1	228 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	PLK2	Q9NYY3	685 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	SEPT3	Q9UH03	358 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	CDH22	Q9UJ99	828 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	VPS28	Q9UK41	221 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823	WNT6	Q9Y6F9	365 aa		11.98	□□□□□ -0.49
CLN6-223	ENST00000637823		F5H423	210 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	AP3B1	O00203	1094 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	ZMPSTE24	O75844	475 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	TTC4	O95801	387 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	ADH1C	P00326	375 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	TYR	P14679	529 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	CES1	P23141	567 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	GLDC	P23378	1020 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	CSK	P41240	450 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	SLC20A2	Q08357	652 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	LMAN2	Q12907	356 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	PDIA2	Q13087	525 aa	Known RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	DMC1	Q14565	340 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	ZNF235	Q14590	738 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	DHCR24	Q15392	516 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	UAP1	Q16222	522 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	EML3	Q32P44	896 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	INO80D	Q53TQ3	878 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	DNAJC21	Q5F1R6	531 aa	Known RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	SYCP2L	Q5T4T6	812 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	TANGO2	Q6ICL3	276 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	RETSAT	Q6NUM9	610 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	LRRC8B	Q6P9F7	803 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	LINC00523	Q86TU6	105 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	CAND1	Q86VP6	1230 aa	Known RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	MFSD6L	Q8IWD5	586 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	DCAF4L2	Q8NA75	395 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	ACD	Q96AP0	544 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	LRRC39	Q96DD0	335 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	IMP4	Q96G21	291 aa	Known RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	TTC25	Q96NG3	672 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	NECTIN4	Q96NY8	510 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	SERPINB12	Q96P63	405 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	MYADM	Q96S97	322 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	MLPH	Q9BV36	600 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	LRRC40	Q9H9A6	602 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	DNAJC17	Q9NVM6	304 aa	Known RBP	11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	REV3L	O60673	3130 aa		11.97	□□□□□ -0.49
CLN6-223	ENST00000637823	NEDD8-MDP1	E9PL57	170 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	RIPK2	O43353	540 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	SASH3	O75995	380 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	NFATC1	O95644	943 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	LAMP2	P13473	410 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	TSHR	P16473	764 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	FCAR	P24071	287 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	GBP2	P32456	591 aa	Predicted RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	CD70	P32970	193 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	MAGEA3	P43357	314 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ARF5	P84085	180 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ITK	Q08881	620 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	MPP3	Q13368	585 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	PDGFRL	Q15198	375 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	CYTH1	Q15438	398 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	KYNU	Q16719	465 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	PLEKHG6	Q3KR16	790 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	BBS9	Q3SYG4	887 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	MSS51	Q4VC12	460 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	DENND2C	Q68D51	928 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ALG1L	Q6GMV1	187 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	NAPEPLD	Q6IQ20	393 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	LRIG3	Q6UXM1	1119 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	LEKR1	Q6ZMV7	388 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	MTERF4	Q7Z6M4	381 aa	Known RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	METTL3	Q86U44	580 aa	Known RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	APCDD1	Q8J025	514 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	PGBD5	Q8N414	524 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	PYROXD1	Q8WU10	500 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ATP2A3	Q93084	1043 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ELSPBP1	Q96BH3	223 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ZNF419	Q96HQ0	510 aa	Predicted RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	PSKH2	Q96QS6	385 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	XPO6	Q96QU8	1125 aa	Known RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	POLR1E	Q9GZS1	481 aa	Known RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	CDC42EP4	Q9H3Q1	356 aa	Known RBP	11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	VPS45	Q9NRW7	570 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	ABCB8	Q9NUT2	735 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	NINJ2	Q9NZG7	142 aa		11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms