RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN3-260ENST00000637578 CEP44Q9C0F1 390 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 ISCUQ9H1K1 167 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 MAGEH1Q9H213 219 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 EBF2Q9HAK2 575 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 CHD5Q8TDI0 1954 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 FAM47DPA6NHR8 397 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 C1QTNF3-AMACRE9PGA6 284 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 LATO43561 262 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 PLRG1O43660 514 aaKnown RBP19.65■□□□□ 0.74
CLN3-260ENST00000637578 ZNF883P0CG24 379 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 CHRNA3P32297 505 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 ACVRL1P37023 503 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 GSE1Q14687 1217 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 EFHC2Q5JST6 749 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 AGBL4Q5VU57 503 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 SCYL2Q6P3W7 929 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 C22orf39Q6P5X5 142 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 VPS36Q86VN1 386 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 DNAAF5Q86Y56 855 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 ARFGAP1Q8N6T3 406 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 OR14C36Q8NHC7 312 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 FNIP1Q8TF40 1166 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 CCDC114Q96M63 670 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 CHP1Q99653 195 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 IMPACTQ9P2X3 320 aa19.65■□□□□ 0.74
CLN3-260ENST00000637578 FARP1Q9Y4F1 1045 aaPredicted RBP19.65■□□□□ 0.74
CLN3-260ENST00000637578 A0A1B0GVT2 93 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 WASH4PA8MWX3 477 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 PLK4O00444 970 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 ATMINO43313 823 aaPredicted RBP19.64■□□□□ 0.73
CLN3-260ENST00000637578 PMLP29590 882 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 RACK1P63244 317 aaKnown RBP19.64■□□□□ 0.73
CLN3-260ENST00000637578 ZNF252P-AS1Q0IIN9 211 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 CNTN1Q12860 1018 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 PLPP6Q8IY26 295 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 DEFB124Q8NES8 71 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 ISG20Q96AZ6 181 aaKnown RBP19.64■□□□□ 0.73
CLN3-260ENST00000637578 NOL6Q9H6R4 1146 aaKnown RBP19.64■□□□□ 0.73
CLN3-260ENST00000637578 DNAI1Q9UI46 699 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 PCNX2A6NKB5 2137 aa19.64■□□□□ 0.73
CLN3-260ENST00000637578 A0A087X0T9 212 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 FAM228BP0C875 321 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 MAPK8IP2Q13387 824 aaPredicted RBP19.63■□□□□ 0.73
CLN3-260ENST00000637578 TEAD4Q15561 434 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 KIF19Q2TAC6 998 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 HLA-BQ31612 363 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 DBX2Q6ZNG2 339 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 DPY19L3Q6ZPD9 716 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 PCDH20Q8N6Y1 951 aaKnown RBP19.63■□□□□ 0.73
CLN3-260ENST00000637578 RTL3Q8N8U3 475 aaKnown RBP19.63■□□□□ 0.73
CLN3-260ENST00000637578 CHST14Q8NCH0 376 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 PANX2Q96RD6 677 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 SLC32A1Q9H598 525 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 IL21RQ9HBE5 538 aa19.63■□□□□ 0.73
CLN3-260ENST00000637578 CNOT8Q9UFF9 292 aaKnown RBP19.63■□□□□ 0.73
CLN3-260ENST00000637578 SSU72P8A0A1W2PR75 194 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 RNF103O00237 685 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 BNIP3LO60238 219 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 RAMP2O60895 175 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 CER1O95813 267 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 PRNPP04156 253 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 MYBL1P10243 752 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 DESP17661 470 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 KCNA4P22459 653 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 PSMA2P25787 234 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 EPHB2P29323 1055 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 HTR7P34969 479 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 TAS2R38P59533 333 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 ASTE1Q2TB18 679 aaPredicted RBP19.62■□□□□ 0.73
CLN3-260ENST00000637578 PIP5KL1Q5T9C9 394 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 TRIM11Q96F44 468 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 TRIM7Q9C029 511 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 TNKS2Q9H2K2 1166 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 GAREM1Q9H706 876 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 ANKRD6Q9Y2G4 727 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 ACTL7AQ9Y615 435 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 KNL1Q8NG31 2342 aa19.62■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3DA0A087WVF3 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3IA0A087WXS9 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3EA0A087X179 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3KA0A087X1G2 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3FA6NER0 549 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 EIF3CLB5ME19 914 aaKnown RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3LB9A6J9 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 VILLO15195 856 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 KDELR3O43731 214 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3HP0C7X1 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 GEMIN4P57678 1058 aaKnown RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 PPP2CBP62714 309 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 PPP2CAP67775 309 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 POLD3Q15054 466 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 KCNT1Q5JUK3 1230 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3GQ6DHY5 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3CQ6IPX1 549 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TRIM69Q86WT6 500 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 TBC1D3Q8IZP1 549 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 EIF3CQ99613 913 aaKnown RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 EPAS1Q99814 870 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 DEF6Q9H4E7 631 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms