RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FAM161BQ96MY7 647 aa20.47■□□□□ 0.87
CLN3-250ENST00000636839 RETREG1Q9H6L5 497 aa20.47■□□□□ 0.87
CLN3-250ENST00000636839 PRUNE2Q8WUY3 3088 aa20.47■□□□□ 0.87
CLN3-250ENST00000636839 TYW5A2RUC4 315 aaKnown RBP20.46■□□□□ 0.87
CLN3-250ENST00000636839 NDC80O14777 642 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 CD160O95971 181 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 SSTR1P30872 391 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 GPX6P59796 221 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 ARF5P84085 180 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 ZNF844Q08AG5 666 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 ASTLQ6HA08 431 aaPredicted RBP20.46■□□□□ 0.87
CLN3-250ENST00000636839 RNF135Q8IUD6 432 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 OR52K1Q8NGK4 314 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 ZFYVE19Q96K21 471 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 NEDD8-MDP1E9PL57 170 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 SMAPO00193 183 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 NEBLO76041 1014 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 AP2A1O95782 977 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 MAGEA3P43357 314 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 SESN2P58004 480 aaPredicted RBP20.46■□□□□ 0.87
CLN3-250ENST00000636839 LMAN2Q12907 356 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 LY6G5CQ5SRR4 150 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 CEP85LQ5SZL2 805 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 PRPF39Q86UA1 669 aaKnown RBP20.46■□□□□ 0.87
CLN3-250ENST00000636839 ASIC4Q96FT7 647 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 ASB16Q96NS5 453 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 FCRL5Q96RD9 977 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 VPS28Q9UK41 221 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 MTCH2Q9Y6C9 303 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 TEX264Q9Y6I9 313 aa20.46■□□□□ 0.87
CLN3-250ENST00000636839 TRIM24O15164 1050 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 PMPCBO75439 489 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 ZMPSTE24O75844 475 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 MT-CO1P00395 513 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 AGTP01019 485 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 RGRP47804 291 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 CELF5Q8N6W0 485 aaKnown RBP20.45■□□□□ 0.86
CLN3-250ENST00000636839 PYROXD1Q8WU10 500 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 IRF7Q92985 503 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 FATE1Q969F0 183 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 NSMCE3Q96MG7 304 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 S1PR5Q9H228 398 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 PLAC1Q9HBJ0 212 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 EIF2B3Q9NR50 452 aaKnown RBP20.45■□□□□ 0.86
CLN3-250ENST00000636839 CLDND1Q9NY35 253 aa20.45■□□□□ 0.86
CLN3-250ENST00000636839 MMP2P08253 660 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 TMCO4Q5TGY1 634 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 NAT16Q8N8M0 369 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 IPMKQ8NFU5 416 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 ARL8AQ96BM9 186 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 EXOC2Q96KP1 924 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 SIGLEC10Q96LC7 697 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 BBS2Q9BXC9 721 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 SPHK2Q9NRA0 654 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 INTS6Q9UL03 887 aaKnown RBP20.44■□□□□ 0.86
CLN3-250ENST00000636839 SMIM23A6NLE4 172 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 K7ERQ8 282 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 ZNF189O75820 626 aaPredicted RBP20.44■□□□□ 0.86
CLN3-250ENST00000636839 TPH1P17752 444 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 MGAT1P26572 445 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 HLA-FP30511 346 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 LTBRP36941 435 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 CD86P42081 329 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 CYTH1Q15438 398 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 MPP7Q5T2T1 576 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 LRRC8BQ6P9F7 803 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 PPP1R21Q6ZMI0 780 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 ARRDC2Q8TBH0 407 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 NSMCE1Q8WV22 266 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 SMARCD2Q92925 531 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 VPS37BQ9H9H4 285 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 UBA2Q9UBT2 640 aaPredicted RBP20.44■□□□□ 0.86
CLN3-250ENST00000636839 VPS51Q9UID3 782 aa20.44■□□□□ 0.86
CLN3-250ENST00000636839 SOX1O00570 391 aaPredicted RBP20.43■□□□□ 0.86
CLN3-250ENST00000636839 SUN1O94901 812 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 NUDT17P0C025 328 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 IGFBP4P22692 258 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 SLCO1A2P46721 670 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 PCSK7Q16549 785 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 LRIT3Q3SXY7 679 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 SPDYCQ5MJ68 293 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 RNF43Q68DV7 783 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 MICALL1Q8N3F8 863 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 FIBINQ8TAL6 211 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 EPS8L3Q8TE67 593 aaKnown RBP20.43■□□□□ 0.86
CLN3-250ENST00000636839 MYLIPQ8WY64 445 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 IMP4Q96G21 291 aaKnown RBP20.43■□□□□ 0.86
CLN3-250ENST00000636839 LMLNQ96KR4 655 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 ABCB8Q9NUT2 735 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 PENKP01210 267 aaPredicted RBP20.43■□□□□ 0.86
CLN3-250ENST00000636839 CYBBP04839 570 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 TYRP14679 529 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 CDK16Q00536 496 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 PRPSAP1Q14558 356 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 TANGO2Q6ICL3 276 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 CFAP36Q96G28 342 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 MRGPRX2Q96LB1 330 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 MYADMQ96S97 322 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 SEMA3CQ99985 751 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 SLC25A51Q9H1U9 297 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms