RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CCNA2P20248 432 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 UGT1A1P22309 533 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 UGT1A4P22310 534 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PCSK6P29122 969 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 UGT1A3P35503 534 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 UGT1A5P35504 534 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 RAD23AP54725 363 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 KCNK10P57789 538 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 MS4A2Q01362 244 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 AGAP9Q5VTM2 703 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 MARVELD2Q8N4S9 558 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 NIPA2Q8N8Q9 360 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 ZNF555Q8NEP9 628 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 CDC26Q8NHZ8 85 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 GIPC2Q8TF65 315 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 CANT1Q8WVQ1 401 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 LHX5Q9H2C1 402 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PCDHGC3Q9UN70 934 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 E7ENX8 843 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 AGRPO00253 132 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TOR1BO14657 336 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 MFSD11O43934 449 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TBC1D4O60343 1298 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 DAB1O75553 588 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 ADIGQ0VDE8 80 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 TMEM26Q6ZUK4 368 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 KBTBD6Q86V97 674 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PLD3Q8IV08 490 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 RBM12BQ8IXT5 1001 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 TMEM192Q8IY95 271 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 ZBTB8BQ8NAP8 495 aaPredicted RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 ZNF280CQ8ND82 737 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 C12orf43Q96C57 262 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 NXNL1Q96CM4 212 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 PABPC5Q96DU9 382 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 WDR83Q9BRX9 315 aaKnown RBP11.19□□□□□ -0.62
CLN3-244ENST00000636147 C9orf16Q9BUW7 83 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 FICDQ9BVA6 458 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 CDT1Q9H211 546 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 CYTH4Q9UIA0 394 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 MFHAS1Q9Y4C4 1052 aa11.19□□□□□ -0.62
CLN3-244ENST00000636147 SLIT2O94813 1529 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ATICP31939 592 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CLK1P49759 484 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 CDKL1Q00532 357 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ITGA7Q13683 1181 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 IMPG1Q17R60 797 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SCIMPQ6UWF3 145 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ERO1BQ86YB8 467 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 TTC39CQ8N584 583 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 C1orf127Q8N9H9 656 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 HPS1Q92902 700 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 LPIN3Q9BQK8 851 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CYP3A43Q9HB55 503 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ATAD3AQ9NVI7 634 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 PRMT7Q9NVM4 692 aaPredicted RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 NDUFAF1Q9Y375 327 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 MARF1Q9Y4F3 1742 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 PABPN1LA6NDY0 278 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 ACKR2O00590 384 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 KPNA4O00629 521 aaPredicted RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 CABYRO75952 493 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 KCNH1O95259 989 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 NFKB1P19838 968 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SLC5A2P31639 672 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 MYBPC1Q00872 1141 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 POLD3Q15054 466 aaPredicted RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 RPS27LQ71UM5 84 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 PSTKQ8IV42 348 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 EDEM1Q92611 657 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 DHRS4Q9BTZ2 278 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 DTLQ9NZJ0 730 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CNTN3Q9P232 1028 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ZDHHC2Q9UIJ5 367 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CDC14AQ9UNH5 594 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ANGPTL3Q9Y5C1 460 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ERI2A8K979 691 aaKnown RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 TMEM114B3SHH9 223 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 NRP2O60462 931 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SNNO75324 88 aaPredicted RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 PGK2P07205 417 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CDH2P19022 906 aaPredicted RBP11.18□□□□□ -0.62
CLN3-244ENST00000636147 TPSB2P20231 275 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CA8P35219 290 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CPOXP36551 454 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 TPSAB1Q15661 275 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 INSCQ1MX18 579 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 MGAT5BQ3V5L5 792 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 TEX44Q53QW1 395 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CLEC6AQ6EIG7 209 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ABRAXAS1Q6UWZ7 409 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ABHD15Q6UXT9 468 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SAMD7Q7Z3H4 446 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 ARFGAP1Q8N6T3 406 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SMYD1Q8NB12 490 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 OR9I1Q8NGQ6 314 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 RIN3Q8TB24 985 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 SLC2A14Q8TDB8 520 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 CLEC4CQ8WTT0 213 aa11.18□□□□□ -0.62
CLN3-244ENST00000636147 AKT1S1Q96B36 256 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms