RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FAM45BPQ6NSW5 357 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 SCUBE1Q8IWY4 988 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 FAM45AQ8TCE6 357 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 ATL1Q8WXF7 558 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 DNAJC9Q8WXX5 260 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 KAT5Q92993 513 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 EXOC2Q96KP1 924 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 SEMA3CQ99985 751 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 OXCT2Q9BYC2 517 aaPredicted RBP11.52□□□□□ -0.56
CLIP1-219ENST00000620786 FBXO6Q9NRD1 293 aaPredicted RBP11.52□□□□□ -0.56
CLIP1-219ENST00000620786 DERAQ9Y315 318 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 NDUFAF1Q9Y375 327 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 A0A0A0MRY4 1105 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 LRRC14BA6NHZ5 514 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 PARNO95453 639 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ELFN1P0C7U0 828 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 HOXB8P17481 243 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 CCND1P24385 295 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SSTR1P30872 391 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 RPL21P46778 160 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 IRX1P78414 480 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SULT2A1Q06520 285 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ABRQ12979 859 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 FASTKQ14296 549 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 TATDN1Q6P1N9 297 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ZNF621Q6ZSS3 439 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 APOPT1Q96IL0 206 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SPATA13Q96N96 652 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 DUSP16Q9BY84 665 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SLC39A8Q9C0K1 460 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 TNPO3Q9Y5L0 923 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 URADA6NGE7 173 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 TRIM13O60858 407 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SLC35G4P0C7Q5 338 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ATP4AP20648 1035 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 PSMD8P48556 350 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 MRPS5P82675 430 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 IRF8Q02556 426 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 UTP15Q8TED0 518 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ALG9Q9H6U8 611 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 KLQ9UEF7 1012 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 PCDHA11Q9Y5I1 949 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 hCG_2014768A0A024R1R8 64 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 TREHO43280 583 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SMARCB1Q12824 385 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 EEF1DP3Q658K8 133 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 PPP2R2DQ66LE6 453 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 NEPROQ6NW34 567 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 PRMT9Q6P2P2 845 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 CRTC3Q6UUV7 619 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 C16orf62Q7Z3J2 963 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 MTDHQ86UE4 582 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 SCAIQ8N9R8 606 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 GULP1Q9UBP9 304 aa11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ZMYND8Q9ULU4 1186 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 NDRG2Q9UN36 371 aaKnown RBP11.52□□□□□ -0.57
CLIP1-219ENST00000620786 ZSCAN5CA6NGD5 496 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 QSOX1O00391 747 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SGTAO43765 313 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DUSP11O75319 330 aaKnown RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 ARF4P18085 180 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PRKAG1P54619 331 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DSG1Q02413 1049 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PLA2G4EQ3MJ16 856 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 FAM98BQ52LJ0 330 aaKnown RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DNAJC14Q6Y2X3 702 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 C12orf29Q8N999 325 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 MTMR8Q96EF0 704 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PADI3Q9ULW8 664 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SNX6Q9UNH7 406 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DUSP12Q9UNI6 340 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PHGDHO43175 533 aaKnown RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 S100A3P33764 101 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 TTPAP49638 278 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DEFA1P59665 94 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 DEFA3P59666 94 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PPP1R26Q5T8A7 1209 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 PROX1Q92786 737 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 ASB2Q96Q27 587 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 MCCC1Q96RQ3 725 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 FAIM2Q9BWQ8 316 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 ARHGAP28Q9P2N2 729 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 TMCO1Q9UM00 188 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SLC27A6Q9Y2P4 619 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SEC13P55735 322 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 COPZ1P61923 177 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 ITIH4Q14624 930 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 TMEM154Q6P9G4 183 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 CASP12Q6UXS9 341 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 NKAPQ8N5F7 415 aaKnown RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 LRRC52Q8N7C0 313 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 OR5B17Q8NGF7 314 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SELENOMQ8WWX9 145 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 SEPHS2Q99611 448 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 TCF25Q9BQ70 676 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 NINJ2Q9NZG7 142 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 COPG1Q9Y678 874 aaKnown RBP11.51□□□□□ -0.57
CLIP1-219ENST00000620786 YDJCA8MPS7 323 aa11.51□□□□□ -0.57
CLIP1-219ENST00000620786 TPP1O14773 563 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms