RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RASGEF1CQ8N431 466 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 SPEM1Q8N4L4 309 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 TMEM105Q8N8V8 129 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 ATP11CQ8NB49 1132 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 ACTL9Q8TC94 416 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 CASKIN2Q8WXE0 1202 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 C16orf45Q96MC5 204 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-211ENST00000618700 ZNF599Q96NL3 588 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 CEP44Q9C0F1 390 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 BRD8Q9H0E9 1235 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 CD248Q9HCU0 757 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 UBA2Q9UBT2 640 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-211ENST00000618700 CKAP5Q14008 2032 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 A0A1W2PQF6 199 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TTC34A8MYJ7 566 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 WASH3PC4AMC7 463 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 PPP1R12AO14974 1030 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 SMAD6O43541 496 aaKnown RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 CEP104O60308 925 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 ATG13O75143 517 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TMCC1O94876 653 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 HOXB3P14651 431 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 PRLRP16471 622 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TCP1P17987 556 aaKnown RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 CCNCP24863 283 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 NNMTP40261 264 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 WASP42768 502 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 PRKD1Q15139 912 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 HNRNPA1L2Q32P51 320 aaKnown RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 EOGTQ5NDL2 527 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TMCO4Q5TGY1 634 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 C22orf39Q6P5X5 142 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 SYT13Q7L8C5 426 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 METTL3Q86U44 580 aaKnown RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TTC13Q8NBP0 860 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 COG1Q8WTW3 980 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 MAML1Q92585 1016 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 LGMNQ99538 433 aa20.08■□□□□ 0.81
UPF3A-211ENST00000618700 TTC7AQ9ULT0 858 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 R3HDM2Q9Y2K5 976 aaKnown RBP20.08■□□□□ 0.81
UPF3A-211ENST00000618700 ZNF821O75541 412 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 FGGP02679 453 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 HLA-EP13747 358 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 HOXB2P14652 356 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 MTAPQ13126 283 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 RFTN1Q14699 578 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 SIX1Q15475 284 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 DLG2Q15700 870 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 CCDC181Q5TID7 509 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 TIGD7Q6NT04 549 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 SYT10Q6XYQ8 523 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 ZNF366Q8N895 744 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 ISG20Q96AZ6 181 aaKnown RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 ZNF419Q96HQ0 510 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 QKIQ96PU8 341 aaKnown RBP eCLIP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 C2orf42Q9NWW7 574 aa20.07■□□□□ 0.8
UPF3A-211ENST00000618700 FCF1Q9Y324 198 aaKnown RBP20.07■□□□□ 0.8
UPF3A-211ENST00000618700 EDDM13A0A1B0GTR0 161 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 HACD1B0YJ81 288 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 MATN3O15232 486 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 EPHX1P07099 455 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 VAV1P15498 845 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 COL9A1P20849 921 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 XRCC4Q13426 336 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 CAMK2GQ13555 558 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-211ENST00000618700 CYTH1Q15438 398 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 LCE2DQ5TA82 110 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-211ENST00000618700 SDE2Q6IQ49 451 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 CCDC13Q8IYE1 715 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 TEX26Q8N6G2 289 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 PCDH20Q8N6Y1 951 aaKnown RBP20.06■□□□□ 0.8
UPF3A-211ENST00000618700 CCNYQ8ND76 341 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 LRRN4Q8WUT4 740 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 MTG2Q9H4K7 406 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 POLR3BQ9NW08 1133 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-211ENST00000618700 LHX3Q9UBR4 397 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 SLC8A2Q9UPR5 921 aa20.06■□□□□ 0.8
UPF3A-211ENST00000618700 TARSL2A2RTX5 802 aaKnown RBP20.05■□□□□ 0.8
UPF3A-211ENST00000618700 ZNF185O15231 689 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 PAPSS2O95340 614 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-211ENST00000618700 CASQ1P31415 396 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 DEKP35659 375 aaKnown RBP20.05■□□□□ 0.8
UPF3A-211ENST00000618700 SLC10A7Q0GE19 358 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 LBRQ14739 615 aaKnown RBP20.05■□□□□ 0.8
UPF3A-211ENST00000618700 CRY1Q16526 586 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 SLC45A4Q5BKX6 768 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 C9orf64Q5T6V5 341 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 KIAA1211LQ6NV74 962 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 Q6ZVU0 165 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 TFB1MQ8WVM0 346 aaKnown RBP20.05■□□□□ 0.8
UPF3A-211ENST00000618700 PTPRN2Q92932 1015 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 MS4A14Q96JA4 679 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 FAM118BQ9BPY3 351 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 SUN2Q9UH99 717 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 SAR1BQ9Y6B6 198 aa20.05■□□□□ 0.8
UPF3A-211ENST00000618700 SHROOM3Q8TF72 1996 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 PGRMC1O00264 195 aaKnown RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 MCF2LO15068 1137 aa20.04■□□□□ 0.8
UPF3A-211ENST00000618700 EIF3EP60228 445 aaKnown RBP20.04■□□□□ 0.8
UPF3A-211ENST00000618700 IFI35P80217 286 aaPredicted RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms