RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 CDY1Q9Y6F8 540 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 H0Y3Z8 333 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 MATN3O15232 486 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 ADAM12O43184 909 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 KDSRQ06136 332 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 CBLBQ13191 982 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 CTC1Q2NKJ3 1217 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 GRTP1Q5TC63 336 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 VWA5B1Q5TIE3 1220 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 ZNF280DQ6N043 979 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 FUT10Q6P4F1 479 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 RTL3Q8N8U3 475 aaKnown RBP12.61□□□□□ -0.39
CIITA-212ENST00000618207 NOL6Q9H6R4 1146 aaKnown RBP12.61□□□□□ -0.39
CIITA-212ENST00000618207 PNPOQ9NVS9 261 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 ACTL7AQ9Y615 435 aa12.61□□□□□ -0.39
CIITA-212ENST00000618207 PRRC2BQ5JSZ5 2229 aaKnown RBP12.61□□□□□ -0.39
CIITA-212ENST00000618207 BUD23O43709 281 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 C2P06681 752 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 CD86P42081 329 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 SLC1A6P48664 564 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 LIMK2P53671 638 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 EML3Q32P44 896 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 FBXL22Q6P050 247 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 RFWD3Q6PCD5 774 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 TIFABQ6ZNK6 161 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 CYS1Q717R9 158 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 DPF3Q92784 378 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 FBXO44Q9H4M3 255 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 DCDC2Q9UHG0 476 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 SOX13Q9UN79 622 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 SCML2Q9UQR0 700 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 AAR2Q9Y312 384 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 MYLKQ15746 1914 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 MTMR11A4FU01 709 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 ERI2A8K979 691 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 CHUKO15111 745 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 FGF10O15520 208 aaPredicted RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 PRKCGP05129 697 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 FGF3P11487 239 aaPredicted RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 ARRB2P32121 409 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 CYP2C18P33260 490 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 NPY2RP49146 381 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 KCNQ1P51787 676 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 FAM189BP81408 668 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 DSC2Q02487 901 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 USP10Q14694 798 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 MANEALQ5VSG8 457 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 KYAT3Q6YP21 454 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 TRIM42Q8IWZ5 723 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 NACA2Q9H009 215 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 SP110Q9HB58 689 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 MARCH5Q9NX47 278 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 COPG2Q9UBF2 871 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 TLR6Q9Y2C9 796 aa12.6□□□□□ -0.39
CIITA-212ENST00000618207 HBS1LQ9Y450 684 aaKnown RBP12.6□□□□□ -0.39
CIITA-212ENST00000618207 ANKRD33BA6NCL7 494 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 TK2O00142 265 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 AURKAO14965 403 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 CSPG5O95196 566 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 ESRRAP11474 423 aaPredicted RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 CCR10P46092 362 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 USP4Q13107 963 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 UBAP2LQ14157 1087 aaKnown RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 MBLAC2Q68D91 279 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 LDB1Q86U70 411 aaPredicted RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 SLC41A1Q8IVJ1 513 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 BCL7CQ8WUZ0 217 aaPredicted RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 SKA1Q96BD8 255 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 SGF29Q96ES7 293 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 SCYL1Q96KG9 808 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 CASD1Q96PB1 797 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 TRIM17Q9Y577 477 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 SQORQ9Y6N5 450 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 MIA3Q5JRA6 1907 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 KIAA0100Q14667 2235 aaKnown RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 COQ9O75208 318 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 CAPN15O75808 1086 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 ANXA9O76027 345 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 AHSGP02765 367 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 PROCP04070 461 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 PIRTP0C851 137 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 RALBP11234 206 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 CPA3P15088 417 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 WNT3AP56704 352 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 DENND5AQ6IQ26 1287 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 TREML1Q86YW5 311 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 RNF135Q8IUD6 432 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 FBXO27Q8NI29 283 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 KCNV2Q8TDN2 545 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 ZNF296Q8WUU4 475 aaPredicted RBP12.59□□□□□ -0.39
CIITA-212ENST00000618207 MRGPRX2Q96LB1 330 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 C7orf26Q96N11 449 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 IL12RB2Q99665 862 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 MIPEPQ99797 713 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 LRMDAQ9H2I8 198 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 TASP1Q9H6P5 420 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 MAN1C1Q9NR34 630 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 THAP1Q9NVV9 213 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 FRMPD3Q5JV73 1810 aa12.59□□□□□ -0.39
CIITA-212ENST00000618207 DOCK4Q8N1I0 1966 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms